Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Setipinna tenuifilis [17]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
MZ6038101Dinucleotide(TG)122457..80124  bpPrimer
MZ6038181Dinucleotide(GT)173454..87232  bpPrimer
MZ6038111Dinucleotide(GA)142848..75151  bpPrimer
MZ6038221Dinucleotide(AC)1632135..166200  bpPrimer
MZ6038071Dinucleotide(TG)112266..87149  bpPrimer
MZ6038211Dinucleotide(CA)132682..107199  bpPrimer
MZ6038091Dinucleotide(CA)132648..73120  bpPrimer
MZ6038121Dinucleotide(GT)102046..65152  bpPrimer
MZ6038171Dinucleotide(CA)204024..63124  bpPrimer
MZ6038141Dinucleotide(GT)122490..113190  bpPrimer
MZ6038201Dinucleotide(AG)193891..128255  bpPrimer
MZ6038161Dinucleotide(AC)244881..128278  bpPrimer
MZ6038151Dinucleotide(TC)612145..156248  bpPrimer
MZ6038152Dinucleotide(CA)714210..223248  bpPrimer
MZ6038131Dinucleotide(CA)142892..119190  bpPrimer
MZ6038231Dinucleotide(AC)1734115..148250  bpPrimer
MZ6038191Dinucleotide(AC)193828..65202  bpPrimer
MZ6038081Dinucleotide(GA)1224102..125198  bpPrimer
 
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