Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Euthynnus affinis [20]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
LC3824301Dinucleotide(TG)326429..92151  bpPrimer
LC3824221Dinucleotide(GT)306040..99158  bpPrimer
LC3824261Dinucleotide(CT)428430..113155  bpPrimer
LC3824341Composite(AT)8(GT)256633..98151  bpPrimer
LC3824391Dinucleotide(TG)377444..117142  bpPrimer
LC3824401Dinucleotide(CA)285671..126154  bpPrimer
LC3824231Dinucleotide(AC)387630..105142  bpPrimer
LC3824311Dinucleotide(GT)316269..130155  bpPrimer
LC3824321Dinucleotide(CA)367232..103158  bpPrimer
LC3824371Dinucleotide(GA)295877..134159  bpPrimer
LC3824361Dinucleotide(TG)326444..107139  bpPrimer
LC3824381Dinucleotide(AC)265280..131159  bpPrimer
LC3824351Dinucleotide(AC)265238..89148  bpPrimer
LC3824281Dinucleotide(GT)265264..115160  bpPrimer
LC3824241Dinucleotide(TG)275435..88134  bpPrimer
LC3824251Dinucleotide(AC)295825..82145  bpPrimer
LC3824271Dinucleotide(TC)255048..97152  bpPrimer
LC3824211Dinucleotide(CT)265280..131159  bpPrimer
LC3824331Dinucleotide(TG)285645..100137  bpPrimer
LC3824291Dinucleotide(TG)326457..120158  bpPrimer
 
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