Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Cociella crocodilus [44]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AB6623481Dinucleotide(GT)35701..70175  bpPrimer
AB6623482Dinucleotide(CA)612164..175175  bpPrimer
AB6620971Dinucleotide(TG)132632..5758  bpPrimer
AB6619061Dinucleotide(CA)102050..6969  bpPrimer
AB6628351Dinucleotide(CA)142838..6565  bpPrimer
AB6625351Dinucleotide(CA)71421..3434  bpPrimer
AB6620761Dinucleotide(TG)17341..3449  bpPrimer
AB6622001Dinucleotide(CA)19381..3875  bpPrimer
AB6621181Dinucleotide(CA)81626..41342  bpPrimer
AB6619691Dinucleotide(AC)4692105..196197  bpPrimer
AB6623651Dinucleotide(CA)8161..1688  bpPrimer
AB6623652Dinucleotide(CT)61223..3488  bpPrimer
AB6626251Dinucleotide(CA)11221..2256  bpPrimer
AB6623901Dinucleotide(AC)91812..2963  bpPrimer
AB6625611Dinucleotide(CT)81652..6799  bpPrimer
AB6625612Dinucleotide(CT)153070..9999  bpPrimer
AB6618661Dinucleotide(CA)2652192..243243  bpPrimer
AB6624101Dinucleotide(CA)275421..7474  bpPrimer
AB6625831Dinucleotide(CT)8161..1632  bpPrimer
AB6627641Dinucleotide(CA)1224100..123123  bpPrimer
AB6620131Dinucleotide(CA)9181..18313  bpPrimer
AB6626691Dinucleotide(AC)6121..1260  bpPrimer
AB6623321Dinucleotide(AC)81698..113230  bpPrimer
AB6619461Composite(AC)10(TC)63238..6979  bpPrimer
AB6622491Dinucleotide(CA)71478..9191  bpPrimer
AB6620311Dinucleotide(CA)23461..46520  bpPrimer
AB6620312Dinucleotide(CT)816499..514520  bpPrimer
AB6618831Dinucleotide(AC)714275..288324  bpPrimer
AB6622921Dinucleotide(AC)11221..2255  bpPrimer
AB6622721Dinucleotide(AC)122413..3637  bpPrimer
AB6624891Dinucleotide(GT)26521..5291  bpPrimer
AB6627121Dinucleotide(CA)132639..6464  bpPrimer
AB6625141Dinucleotide(TG)122421..4445  bpPrimer
AB6626911Dinucleotide(GT)61226..3750  bpPrimer
AB6619241Dinucleotide(TG)26521..5275  bpPrimer
AB6627871Dinucleotide(CA)142859..8686  bpPrimer
AB6621811Dinucleotide(TG)61222..3364  bpPrimer
AB6621812Dinucleotide(TG)71436..4964  bpPrimer
AB6620511Dinucleotide(AC)1224193..216216  bpPrimer
AB6621381Dinucleotide(AC)102070..8990  bpPrimer
AB6623101Dinucleotide(CA)16321..3275  bpPrimer
AB6626481Dinucleotide(CA)153011..4040  bpPrimer
AB6624311Dinucleotide(CA)14281..2836  bpPrimer
 
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