Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Epinephelus coioides [147]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KT6957841Dinucleotide(TG)1938205..242324  bpPrimer
KU2557501Trinucleotide(TAA)721232..252338  bpPrimer
KT6957781Dinucleotide(AC)193890..127261  bpPrimer
KU2557391Trinucleotide(TAT)1030179..208330  bpPrimer
KU2557821Composite(AT)12(GTAT)544103..146184  bpPrimer
KT6957891Dinucleotide(GT)153083..112367  bpPrimer
KT6957892Dinucleotide(TG)1122255..276367  bpPrimer
KT6957881Dinucleotide(TA)193869..106168  bpPrimer
JN9443131Dinucleotide(AG)61268..79480  bpPrimer
KU2557471Composite(TAT)6(TAG)156348..110158  bpPrimer
GQ2680011Composite(AC)13(TG)944117..160168  bpPrimer
KU2557791Mononucleotide(T)1111129..139298  bpPrimer
KU2557792Tetranucleotide(ATTC)520251..270298  bpPrimer
KU2557461Trinucleotide(ATA)92725..51244  bpPrimer
KU2557721Tetranucleotide(ATGG)62483..106193  bpPrimer
KU2557781Tetranucleotide(TGTC)832109..140317  bpPrimer
KU2557782Composite(TC)9(AC)732155..186317  bpPrimer
JN9443241Dinucleotide(GT)2448285..332466  bpPrimer
KU2557801Tetranucleotide(ATCA)1144141..184217  bpPrimer
KT6957731Dinucleotide(GT)1122106..127187  bpPrimer
JQ0040731Mononucleotide(T)1010633..642834  bpPrimer
GQ2679971Dinucleotide(CA)142870..97186  bpPrimer
KU2557671c*(GACA)6(AC)10*4123..63168  bpPrimer
KU2557672Dinucleotide(CA)61271..82168  bpPrimer
KU2557621Tetranucleotide(ATGG)62431..54304  bpPrimer
KU2557622Mononucleotide(A)1111219..229304  bpPrimer
JQ0040791Mononucleotide(A)1414523..536616  bpPrimer
KT6957631Dinucleotide(AC)2652110..161329  bpPrimer
KU2557521Trinucleotide(TTC)824216..239297  bpPrimer
KU2557511Trinucleotide(CTC)72156..76208  bpPrimer
JN9443191Mononucleotide(A)10101003..10121714  bpPrimer
JN9443192Mononucleotide(A)10101092..11011714  bpPrimer
JN9443193Mononucleotide(C)13131183..11951714  bpPrimer
JN9443194Mononucleotide(A)10101233..12421714  bpPrimer
JN9443195Mononucleotide(C)12121464..14751714  bpPrimer
KT6957711Dinucleotide(TG)71455..68308  bpPrimer
KT6957712Dinucleotide(AC)816181..196308  bpPrimer
KT6957713Dinucleotide(CA)1326198..223308  bpPrimer
KU2557591c*(AGAC)7(AC)9*4443..86188  bpPrimer
KU2557592Dinucleotide(CA)61288..99188  bpPrimer
KU2557701Tetranucleotide(ACAT)52087..106297  bpPrimer
KU2557702Dinucleotide(CA)1836216..251297  bpPrimer
GQ4290071Dinucleotide(GT)1530249..278319  bpPrimer
KT6957741Dinucleotide(GT)816108..123200  bpPrimer
KT6957742Composite(GT)10(GA)1040126..165200  bpPrimer
KU2557691Dinucleotide(TG)112243..64319  bpPrimer
KU2557692Tetranucleotide(GTGC)52082..101319  bpPrimer
KT6957651Dinucleotide(CA)1530108..137187  bpPrimer
KT6957691Dinucleotide(TG)142875..102175  bpPrimer
KU2557441Trinucleotide(ATC)154539..83225  bpPrimer
KU2557442Dinucleotide(GT)612130..141225  bpPrimer
KU2557443Dinucleotide(TG)1632159..190225  bpPrimer
KU2557571Tetranucleotide(GATA)124897..144176  bpPrimer
KU2557481Trinucleotide(GAG)82474..97151  bpPrimer
GQ2679981Dinucleotide(AG)1326203..228342  bpPrimer
JQ0040621Mononucleotide(A)10101..10546  bpPrimer
JQ0040622Tetranucleotide(ATCC)520104..123546  bpPrimer
KU2557451Trinucleotide(GAT)1030179..208367  bpPrimer
KT6957751Dinucleotide(AC)81637..52460  bpPrimer
KT6957752Dinucleotide(AC)2550121..170460  bpPrimer
KT6957753Dinucleotide(GT)1224263..286460  bpPrimer
KU2557651Tetranucleotide(TTTA)52072..91140  bpPrimer
JN9443331Mononucleotide(A)12121..121417  bpPrimer
KT6957821Composite(CG)6(CA)164442..85205  bpPrimer
KT6957822Dinucleotide(GT)2958123..180205  bpPrimer
KU2557551Trinucleotide(TTC)72177..97224  bpPrimer
KT6957701Dinucleotide(TA)1530134..163229  bpPrimer
GQ2679941Dinucleotide(AC)1836132..167254  bpPrimer
GQ2679961Dinucleotide(GT)81680..95194  bpPrimer
JN9443291Mononucleotide(A)1010402..411553  bpPrimer
GQ4290091Dinucleotide(GA)918101..118377  bpPrimer
GQ4290081Dinucleotide(TG)1530376..405432  bpPrimer
KU2557561Tetranucleotide(TTAT)52029..48120  bpPrimer
GQ2679951Dinucleotide(AC)183652..87171  bpPrimer
GQ2679952Dinucleotide(AC)1224110..133171  bpPrimer
JN9443301Dinucleotide(TC)1938339..376596  bpPrimer
KT6957811Dinucleotide(TG)1428139..166202  bpPrimer
KU2557381Trinucleotide(AAT)133963..101291  bpPrimer
KU2557382Trinucleotide(ATA)1545103..147291  bpPrimer
KU2557751Tetranucleotide(ATCT)72865..92321  bpPrimer
KT6957671Dinucleotide(TA)1020176..195307  bpPrimer
KT6957771Dinucleotide(AC)1530250..279387  bpPrimer
KU2557351Mononucleotide(A)1111164..174396  bpPrimer
KU2557352Mononucleotide(A)1313176..188396  bpPrimer
KU2557353Trinucleotide(TTG)927207..233396  bpPrimer
KU2557661Tetranucleotide(TTCT)62492..115164  bpPrimer
KU2557741Tetranucleotide(GATG)728191..218270  bpPrimer
KU2557681Tetranucleotide(GTGC)520167..186352  bpPrimer
KU2557682Dinucleotide(TG)1020188..207352  bpPrimer
KU2557341Trinucleotide(TAT)721214..234281  bpPrimer
KU2557761Tetranucleotide(TCAA)624183..206254  bpPrimer
GQ2680001Dinucleotide(CA)193849..86206  bpPrimer
KU2557581Tetranucleotide(AATT)52042..61143  bpPrimer
KT6957681Dinucleotide(AT)112298..119227  bpPrimer
KT6957861Dinucleotide(AT)1122119..140249  bpPrimer
JQ0040711Mononucleotide(T)1010657..666760  bpPrimer
KT6957871Dinucleotide(TG)2754156..209296  bpPrimer
KU2557411Trinucleotide(GAA)154547..91209  bpPrimer
JN9443341Mononucleotide(A)1010940..949979  bpPrimer
KU2557601Tetranucleotide(TCTA)1144195..238333  bpPrimer
KT6957661Composite(TA)11(TG)124643..88162  bpPrimer
KT6957721Dinucleotide(AT)1122249..270387  bpPrimer
GQ2679991Trinucleotide(CAT)51573..87139  bpPrimer
KU2557491Trinucleotide(TCC)103030..59244  bpPrimer
KU2557492Trinucleotide(TCA)927126..152244  bpPrimer
KU2557371Trinucleotide(TTA)927123..149398  bpPrimer
KT6957761Dinucleotide(AT)102057..76245  bpPrimer
KU2557431Trinucleotide(ATA)82448..71130  bpPrimer
KU2557541Trinucleotide(TGT)1751262..312390  bpPrimer
KU2557771Tetranucleotide(CATC)72835..62240  bpPrimer
KU2557611Tetranucleotide(GCCT)520155..174256  bpPrimer
KU2557641Tetranucleotide(CTCA)520233..252334  bpPrimer
KU2557642Dinucleotide(CA)816257..272334  bpPrimer
KU2557711c*(GCAC)5(CA)15*47111..157247  bpPrimer
KU2557361Trinucleotide(CCT)92724..50139  bpPrimer
JN9443181Mononucleotide(T)1010576..5851158  bpPrimer
JN9443182Mononucleotide(T)1010825..8341158  bpPrimer
JN9443183Mononucleotide(T)1212977..9881158  bpPrimer
JN9443184Mononucleotide(T)1515994..10081158  bpPrimer
JN9443185Mononucleotide(T)13131098..11101158  bpPrimer
KU2557401Trinucleotide(TCA)195741..97127  bpPrimer
KU2557421Trinucleotide(CCT)103081..110175  bpPrimer
KT6957801Dinucleotide(AC)122489..112357  bpPrimer
KU2557331Trinucleotide(AGG)51599..113292  bpPrimer
KU2557332Trinucleotide(GAG)1133116..148292  bpPrimer
KT6957831Dinucleotide(TC)61234..45266  bpPrimer
KT6957832Dinucleotide(AC)193850..87266  bpPrimer
KU2557731c*(GCAC)5(CA)15*47188..234258  bpPrimer
GQ2679931Dinucleotide(CA)91825..42198  bpPrimer
KU2557531Trinucleotide(TAA)82447..70194  bpPrimer
KU2557532Dinucleotide(AC)612134..145194  bpPrimer
KU2557631Tetranucleotide(ATTG)72849..76132  bpPrimer
KT6957851Dinucleotide(AT)1020131..150268  bpPrimer
KT6957791Dinucleotide(TA)1020248..267379  bpPrimer
JQ0040601Mononucleotide(T)11112..12794  bpPrimer
KT6957641Dinucleotide(TG)102047..66278  bpPrimer
KU2557811Tetranucleotide(TTCC)1144140..183205  bpPrimer
 
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