Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Epinephelus lanceolatus [155]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KT7573401Tetranucleotide(TCTA)832258..289941  bpPrimer
JN1856331Dinucleotide(AC)2142124..165332  bpPrimer
JN1856241Dinucleotide(GT)224452..95197  bpPrimer
JN0074211Trinucleotide(GAA)6181..18253  bpPrimer
JN0074212Trinucleotide(CTT)515226..240253  bpPrimer
KJ4513891Mononucleotide(T)101016294..1630316642  bpPrimer
KT7573331Tetranucleotide(CACT)728376..403441  bpPrimer
JN0074431Mononucleotide(A)1414505..518653  bpPrimer
JN0074171Trinucleotide(GTT)5151..15801  bpPrimer
JN0074172Trinucleotide(ACA)618777..794801  bpPrimer
JN1856411Dinucleotide(CA)1836209..244336  bpPrimer
KP2304301Dinucleotide(GT)163284..115279  bpPrimer
JN0074701Dinucleotide(TG)1938610..647791  bpPrimer
EF6071291Dinucleotide(TG)816327..342657  bpPrimer
GQ9123301Trinucleotide(CTT)8243..26688  bpPrimer
GQ9123302Trinucleotide(AAG)824663..686688  bpPrimer
KP2304401Dinucleotide(GT)1836349..384527  bpPrimer
JN1856521Dinucleotide(GT)2244112..155237  bpPrimer
JN0074201Trinucleotide(GAA)7211..21335  bpPrimer
JN0074202Trinucleotide(TCT)515307..321335  bpPrimer
EF6071341Dinucleotide(GT)1836176..211251  bpPrimer
GQ9123331Trinucleotide(CTT)9273..29738  bpPrimer
GQ9123332Trinucleotide(AAG)515689..703738  bpPrimer
GQ9123333Trinucleotide(AGA)1030705..734738  bpPrimer
JN1856311Dinucleotide(AC)265239..90273  bpPrimer
JN0074141Trinucleotide(AGG)6181..18649  bpPrimer
JN0074142Dinucleotide(GT)714381..394649  bpPrimer
JN0074143Trinucleotide(CTC)515624..638649  bpPrimer
KT7573311Trinucleotide(ATA)1339116..154487  bpPrimer
KT7573321Tetranucleotide(TCAA)1456103..158844  bpPrimer
KT7573322Mononucleotide(T)1313811..823844  bpPrimer
JN0074441Dinucleotide(CA)1020304..3231204  bpPrimer
KT7573391Tetranucleotide(ATGT)832132..163916  bpPrimer
JN0074401Mononucleotide(A)101033..42364  bpPrimer
JN1856391Dinucleotide(CA)1734288..321623  bpPrimer
EF6071381Trinucleotide(TCC)824146..169544  bpPrimer
EF6071382Dinucleotide(AC)1224330..353544  bpPrimer
EF6071351Dinucleotide(TG)71472..85683  bpPrimer
JN0074461Mononucleotide(A)1313262..274627  bpPrimer
JN1856291Dinucleotide(AC)244879..126377  bpPrimer
KT7573421Tetranucleotide(TGAT)936237..272611  bpPrimer
KT7573422Dinucleotide(TG)2448564..611611  bpPrimer
KP2304421Dinucleotide(AC)255061..110454  bpPrimer
KP2304422Dinucleotide(AC)1326235..260454  bpPrimer
KP2304423Dinucleotide(CA)1020268..287454  bpPrimer
KP2304271Dinucleotide(TC)61275..86378  bpPrimer
KP2304272Dinucleotide(GT)153098..127378  bpPrimer
JF3176341Trinucleotide(CTT)8243..26620  bpPrimer
JF3176342Trinucleotide(AAG)927592..618620  bpPrimer
KP2304441Dinucleotide(CA)1326170..195664  bpPrimer
JN0074671Mononucleotide(T)1010586..595600  bpPrimer
KP2304341Dinucleotide(GT)1836106..141427  bpPrimer
JN1856511Dinucleotide(GT)183678..113427  bpPrimer
KP2304311Dinucleotide(AC)122474..97399  bpPrimer
KP2304312Dinucleotide(CA)122499..122399  bpPrimer
JN1856381Dinucleotide(TG)1836279..314424  bpPrimer
JN0074411Dinucleotide(TG)1326400..425692  bpPrimer
JN0074412Dinucleotide(TG)1428655..682692  bpPrimer
KP2304351Dinucleotide(TC)2142178..219482  bpPrimer
JN1856371Mononucleotide(T)101088..97250  bpPrimer
JN1856372Dinucleotide(TG)2244180..223250  bpPrimer
JN0074261Mononucleotide(C)10105..14355  bpPrimer
EF6071371Dinucleotide(AC)173473..106289  bpPrimer
GQ9123321Trinucleotide(CTT)8243..26613  bpPrimer
GQ9123322Trinucleotide(GAA)824587..610613  bpPrimer
JN0074111Trinucleotide(AGG)5151..15531  bpPrimer
JN0074112Trinucleotide(TCC)515507..521531  bpPrimer
JN1856281Tetranucleotide(CATA)936189..224294  bpPrimer
JF3176331Trinucleotide(CTT)8243..261026  bpPrimer
JF3176332Mononucleotide(A)11111016..10261026  bpPrimer
KT7573361Tetranucleotide(TCTA)1040810..849951  bpPrimer
EF6071331Dinucleotide(TG)1224388..411894  bpPrimer
EF6071332Trinucleotide(GCT)824555..578894  bpPrimer
EF6071333Trinucleotide(CTT)515776..790894  bpPrimer
KP2304331Dinucleotide(AC)1938113..150435  bpPrimer
JN0074251Dinucleotide(AC)1326335..360806  bpPrimer
JN1856481Dinucleotide(CA)2244135..178342  bpPrimer
JN1856421Dinucleotide(CA)1734136..169273  bpPrimer
KT7573271Trinucleotide(TTC)1339199..237613  bpPrimer
KT7573272Dinucleotide(TG)612427..438613  bpPrimer
JN1856431Dinucleotide(AC)1326193..218279  bpPrimer
JN1856451Dinucleotide(TG)244869..116287  bpPrimer
JN0074161Trinucleotide(GTT)5151..15506  bpPrimer
JN0074162Trinucleotide(AAC)515484..498506  bpPrimer
JN1856531Dinucleotide(TG)112253..74298  bpPrimer
JN0074551Mononucleotide(T)1010401..410902  bpPrimer
JN0074191Trinucleotide(GAA)5151..15455  bpPrimer
JN0074192Trinucleotide(TCT)515429..443455  bpPrimer
JN1856321Tetranucleotide(TTGG)124838..85330  bpPrimer
JN1856341Dinucleotide(GT)1326165..190448  bpPrimer
GQ9123351Trinucleotide(CTT)8243..26820  bpPrimer
GQ9123352Trinucleotide(AAG)824795..818820  bpPrimer
KT7573471Tetranucleotide(ATGG)936368..403769  bpPrimer
JN1856441Dinucleotide(AC)2142248..289340  bpPrimer
JN1856361Dinucleotide(GT)2652137..188315  bpPrimer
GQ9123361Trinucleotide(CTT)8243..26539  bpPrimer
GQ9123362Dinucleotide(GT)816106..121539  bpPrimer
GQ9123363Trinucleotide(AAG)824514..537539  bpPrimer
KP2304291Dinucleotide(TG)1632338..369482  bpPrimer
KP2304381Composite(TC)8(AC)1852129..180449  bpPrimer
KP2304382Dinucleotide(TC)612195..206449  bpPrimer
KP2304411Dinucleotide(TG)2244117..160249  bpPrimer
JN0074231Trinucleotide(CAA)5151..15493  bpPrimer
JN0074232Composite(GCT)5(GTT)530455..484493  bpPrimer
EF6071321Dinucleotide(GT)1020594..613655  bpPrimer
JN0074151Trinucleotide(GTT)5151..151152  bpPrimer
KT7573301Trinucleotide(TGC)1236476..511960  bpPrimer
KT7573251Trinucleotide(CAT)1133667..699932  bpPrimer
GQ9123341Trinucleotide(CTT)8243..26656  bpPrimer
GQ9123342Trinucleotide(TAC)1442582..623656  bpPrimer
GQ9123343Trinucleotide(GAA)824630..653656  bpPrimer
GQ9123311Trinucleotide(CTT)8243..26374  bpPrimer
GQ9123312Trinucleotide(AAG)824349..372374  bpPrimer
JN1856501Dinucleotide(TG)2448105..152286  bpPrimer
JN0074181Trinucleotide(GTT)5151..15364  bpPrimer
JN0074182Dinucleotide(GT)2040107..146364  bpPrimer
JN0074183Trinucleotide(ACA)515340..354364  bpPrimer
KT7573281Trinucleotide(CTT)1133624..656932  bpPrimer
KT7573282Trinucleotide(TCT)1133658..690932  bpPrimer
JN1856461Dinucleotide(TG)2142113..154286  bpPrimer
JN1856462Dinucleotide(GT)714173..186286  bpPrimer
KT7573431Tetranucleotide(ATTG)832699..730918  bpPrimer
KT7573461Tetranucleotide(CATC)936230..265696  bpPrimer
KT7573351Tetranucleotide(ATTG)832498..529608  bpPrimer
JN1856301Dinucleotide(AC)2652130..181606  bpPrimer
KT7573291Trinucleotide(ATT)154580..124582  bpPrimer
KT7573292Dinucleotide(TG)612468..479582  bpPrimer
JN1856231Dinucleotide(GT)1020209..228350  bpPrimer
JN1856232Dinucleotide(GT)1530231..260350  bpPrimer
KP2304361Dinucleotide(TG)612138..149560  bpPrimer
KP2304362Dinucleotide(TG)1938260..297560  bpPrimer
KP2304431Dinucleotide(AC)234632..77283  bpPrimer
EF6071361Dinucleotide(TG)2754102..155455  bpPrimer
JN1856251Dinucleotide(CA)71451..64529  bpPrimer
JN1856252Dinucleotide(AT)612118..129529  bpPrimer
JN1856253Dinucleotide(AC)612215..226529  bpPrimer
JN1856254Dinucleotide(CA)2244307..350529  bpPrimer
KT7573241Trinucleotide(TTG)1545245..2891021  bpPrimer
JN0074331Mononucleotide(A)1010862..8711174  bpPrimer
KT7573381Tetranucleotide(ATCT)936189..224853  bpPrimer
KT7573382Tetranucleotide(ATCT)624367..390853  bpPrimer
KT7573383Tetranucleotide(ATCT)520704..723853  bpPrimer
KP2304321Dinucleotide(TG)2040285..324613  bpPrimer
JN0074121Trinucleotide(AGG)5151..15414  bpPrimer
JN0074122Trinucleotide(GAG)61818..35414  bpPrimer
JN0074123Trinucleotide(CCT)618388..405414  bpPrimer
KP2304371Composite(GCT)9(GAT)851226..276634  bpPrimer
KP2304372Trinucleotide(TGA)1030397..426634  bpPrimer
KT7573411Tetranucleotide(TCTA)1040330..369656  bpPrimer
KT7573341Tetranucleotide(GACA)832423..454970  bpPrimer
KT7573342Tetranucleotide(CAGA)520457..476970  bpPrimer
KT7573343Mononucleotide(A)1515901..915970  bpPrimer
JN1856401Dinucleotide(TG)132684..109286  bpPrimer
JN1856261Dinucleotide(TG)153061..90283  bpPrimer
JN0074291Mononucleotide(A)1212808..8191221  bpPrimer
JN0074292Mononucleotide(T)1717989..10051221  bpPrimer
KT7573261Trinucleotide(CAG)154597..1411040  bpPrimer
JN1856221Dinucleotide(AC)1326168..193271  bpPrimer
KT7573371Tetranucleotide(AGAT)832750..781954  bpPrimer
JN0074221Trinucleotide(GAA)6181..18666  bpPrimer
JN0074222Trinucleotide(TCT)721632..652666  bpPrimer
JN0074571Mononucleotide(A)1515295..3091126  bpPrimer
JN1856491Dinucleotide(CA)2448136..183287  bpPrimer
GQ9123291Trinucleotide(CTT)8243..26630  bpPrimer
GQ9123292Trinucleotide(AGA)824603..626630  bpPrimer
JN0074131Trinucleotide(AGG)7211..21560  bpPrimer
JN0074132Tetranucleotide(GTCT)832118..149560  bpPrimer
JN0074133Dinucleotide(TC)714175..188560  bpPrimer
JN0074134Tetranucleotide(TCTG)624195..218560  bpPrimer
JN0074135Tetranucleotide(TCTG)520231..250560  bpPrimer
JN0074136Tetranucleotide(TCTG)520263..282560  bpPrimer
JN0074137Tetranucleotide(TCTG)624325..348560  bpPrimer
JN0074138Tetranucleotide(TGTC)728353..380560  bpPrimer
JN0074139Tetranucleotide(TCTG)624391..414560  bpPrimer
JN00741310Trinucleotide(CCT)824528..551560  bpPrimer
KP2304261Dinucleotide(CA)2142128..169318  bpPrimer
JN1856351Dinucleotide(TG)142859..86278  bpPrimer
JF3176321Trinucleotide(CTT)8243..26618  bpPrimer
JF3176322Trinucleotide(AAG)824593..616618  bpPrimer
KP2304451Dinucleotide(GT)1836150..185336  bpPrimer
JN1856471Dinucleotide(TG)2244165..208330  bpPrimer
KP2304391Dinucleotide(CA)1836327..362497  bpPrimer
EF6071311Dinucleotide(CA)2040226..265807  bpPrimer
KT7573451Tetranucleotide(CAGT)83265..961008  bpPrimer
KT7573441Tetranucleotide(TGTC)936107..142811  bpPrimer
KP2304281Dinucleotide(GT)2754111..164371  bpPrimer
JN1856271Composite(CT)10(CA)1244333..376443  bpPrimer
 
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