Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Epinephelus fuscoguttatus [350]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
JN0488621Mononucleotide(T)101054..631150  bpPrimer
GU7991891Dinucleotide(CA)1938381..418723  bpPrimer
GU7993081Dinucleotide(AC)1836487..522840  bpPrimer
GU7993041Mononucleotide(A)1010278..287675  bpPrimer
JN2031081Dinucleotide(CA)2754145..198325  bpPrimer
GU7992951Dinucleotide(GT)4998217..314747  bpPrimer
GU7992952Mononucleotide(C)1414417..430747  bpPrimer
GU7992953Dinucleotide(AC)612525..536747  bpPrimer
JN0488341Composite(TC)18(AC)1872265..336595  bpPrimer
JN2031141Dinucleotide(AC)2652119..170382  bpPrimer
GU7992701Composite(TG)17(TC)646570..615849  bpPrimer
GU7992702Dinucleotide(TC)2754620..673849  bpPrimer
KF3564071Trinucleotide(AAG)5151..15183  bpPrimer
KF3564072Trinucleotide(CTT)515154..168183  bpPrimer
JN0488511Dinucleotide(GT)1122403..4241157  bpPrimer
JN0488512Dinucleotide(AC)1326545..5701157  bpPrimer
JN0488301Mononucleotide(T)1212294..3051185  bpPrimer
GQ9123251Trinucleotide(AGA)51514..28799  bpPrimer
KF3564111Trinucleotide(ACG)5151..15369  bpPrimer
KF3564112Trinucleotide(CGT)515340..354369  bpPrimer
EU0165411Trinucleotide(ACA)1133446..478634  bpPrimer
GU7992711Dinucleotide(CA)714770..783835  bpPrimer
JN2031011Dinucleotide(CA)2244146..189433  bpPrimer
EU0165361Tetranucleotide(CTGT)936258..293607  bpPrimer
GU7992031Dinucleotide(CA)102087..106711  bpPrimer
GU7992032Dinucleotide(CA)1734125..158711  bpPrimer
GU7992191Trinucleotide(CTG)515105..119575  bpPrimer
GU7992192Dinucleotide(AC)918263..280575  bpPrimer
GU7992981Dinucleotide(AC)918369..386832  bpPrimer
GU7992982Dinucleotide(GT)918570..587832  bpPrimer
GU7992983Dinucleotide(TG)612685..696832  bpPrimer
GQ9123211Trinucleotide(CAA)8243..26439  bpPrimer
GQ9123212Trinucleotide(TTG)824414..437439  bpPrimer
JN0488681Mononucleotide(A)11111050..10601112  bpPrimer
KT9518551Dinucleotide(TC)295873..130289  bpPrimer
KT9518552Dinucleotide(CT)816132..147289  bpPrimer
GU7991751Dinucleotide(GT)3876228..303751  bpPrimer
JF3176311Trinucleotide(CTT)8243..26536  bpPrimer
JF3176312Trinucleotide(AGA)824509..532536  bpPrimer
GU7992041Dinucleotide(TG)1224620..643884  bpPrimer
EU0165451Dinucleotide(TG)316233..94488  bpPrimer
GU7992451Dinucleotide(AG)1836612..647909  bpPrimer
GU7991331Mononucleotide(T)1111322..3321038  bpPrimer
KF4128061Dinucleotide(CA)102065..84340  bpPrimer
KF4128062Trinucleotide(AGG)824116..139340  bpPrimer
KF4128063Trinucleotide(TCT)824313..336340  bpPrimer
JN2031231Dinucleotide(GT)1122300..321487  bpPrimer
GQ9123221Trinucleotide(CAA)8243..26523  bpPrimer
GQ9123222Trinucleotide(TTG)1030492..521523  bpPrimer
JN2031241Dinucleotide(TG)214263..104419  bpPrimer
GQ9123191Trinucleotide(CAA)8243..26560  bpPrimer
GQ9123192Trinucleotide(TGT)824534..557560  bpPrimer
KF3564061Trinucleotide(AAG)5151..15728  bpPrimer
KF3564062Dinucleotide(GT)2040404..443728  bpPrimer
KF3564063Trinucleotide(TTC)515697..711728  bpPrimer
GU7991681Dinucleotide(CA)142866..93793  bpPrimer
GU7992801Mononucleotide(T)1616737..752813  bpPrimer
GU7992802Dinucleotide(TG)2346767..812813  bpPrimer
JN2031091Dinucleotide(CA)132656..81299  bpPrimer
GU7992821Dinucleotide(CT)612487..498827  bpPrimer
GU7993111Mononucleotide(G)1212271..2821385  bpPrimer
GU7993112Mononucleotide(G)1010358..3671385  bpPrimer
JN0488401Mononucleotide(A)1818955..9721053  bpPrimer
GU7992621Dinucleotide(GT)612220..231598  bpPrimer
GU7991611Mononucleotide(T)2020201..2201099  bpPrimer
GU7991612Dinucleotide(TG)612874..8851099  bpPrimer
KF4128081Trinucleotide(CGT)515223..237240  bpPrimer
JN2031161Dinucleotide(TG)306060..119339  bpPrimer
JN2031281Dinucleotide(TG)2244340..383557  bpPrimer
GU7991391Trinucleotide(GTT)721591..611816  bpPrimer
GU7993191Dinucleotide(AG)612637..648833  bpPrimer
GU7993192Dinucleotide(AC)612766..777833  bpPrimer
GU7991851Dinucleotide(CA)612974..9851039  bpPrimer
KT9518481Trinucleotide(TGC)1442375..416636  bpPrimer
JN2031181Dinucleotide(TG)163298..129289  bpPrimer
JN2031182Dinucleotide(GT)1734131..164289  bpPrimer
GQ9123261Dinucleotide(TG)1530273..3021041  bpPrimer
GU7992641Mononucleotide(G)1111271..2811382  bpPrimer
GU7992642Trinucleotide(GTG)515304..3181382  bpPrimer
GU7992643Mononucleotide(G)1010357..3661382  bpPrimer
GU7992051Dinucleotide(CA)2652641..692820  bpPrimer
EU0165381c*(CAGA)8(AC)19*69291..359631  bpPrimer
GU7991771Dinucleotide(GT)2958165..222578  bpPrimer
GU7991601Tetranucleotide(ATGA)104079..118840  bpPrimer
JN2031221Dinucleotide(AC)1428330..357485  bpPrimer
JN2031031Dinucleotide(TG)163298..129289  bpPrimer
JN2031032Dinucleotide(GT)1734131..164289  bpPrimer
GU7991291Mononucleotide(T)1010880..889991  bpPrimer
EU0165331Dinucleotide(CA)1122297..318614  bpPrimer
EU0165332Dinucleotide(AC)1632402..433614  bpPrimer
JN2031261Dinucleotide(AC)2040194..233353  bpPrimer
GU7992491Dinucleotide(CA)81624..39869  bpPrimer
GU7992492Pentanucleotide(TCCTC)630117..146869  bpPrimer
GU7992493Dinucleotide(TC)1020481..500869  bpPrimer
GU7992791Dinucleotide(GT)918672..689905  bpPrimer
GU7993051Trinucleotide(CTT)721148..168710  bpPrimer
GU7992551Dinucleotide(GT)1836399..434968  bpPrimer
GU7992552Dinucleotide(AG)816446..461968  bpPrimer
JN2031171Pentanucleotide(GAAGA)13659..73486  bpPrimer
JN2031172Dinucleotide(AC)1530188..217486  bpPrimer
JN9443451Mononucleotide(T)10101072..10811277  bpPrimer
JN9443452Mononucleotide(T)10101190..11991277  bpPrimer
JN9443453Mononucleotide(C)14141258..12711277  bpPrimer
EU0165421Dinucleotide(TG)2448507..554766  bpPrimer
JN2030981Dinucleotide(CA)1530349..378432  bpPrimer
GU7992061Trinucleotide(GGA)618316..333629  bpPrimer
GU7992081Mononucleotide(A)1010564..573979  bpPrimer
JN2031151c*(GTT)12(T)13*4755..101546  bpPrimer
KT9518561Dinucleotide(TG)714114..127452  bpPrimer
GU7992531Trinucleotide(AAG)824706..729828  bpPrimer
KF3564081Trinucleotide(ACG)5151..15250  bpPrimer
KF3564082Trinucleotide(CGT)515221..235250  bpPrimer
GU7991421Dinucleotide(GT)2652128..179558  bpPrimer
GU7991422Dinucleotide(TG)816185..200558  bpPrimer
GU7991423Dinucleotide(GT)612452..463558  bpPrimer
JN2030931Dinucleotide(TG)1224539..562823  bpPrimer
GU7993161Dinucleotide(AC)81676..91787  bpPrimer
GU7993162Dinucleotide(TG)612150..161787  bpPrimer
GQ9123281Trinucleotide(AGA)51514..28659  bpPrimer
GQ9123282Dinucleotide(AC)714641..654659  bpPrimer
GU7991871Mononucleotide(T)1414576..589770  bpPrimer
GU7992421Dinucleotide(CA)1326768..793861  bpPrimer
GU7992361Dinucleotide(AC)91883..1001275  bpPrimer
GU7992362Mononucleotide(A)1111734..7441275  bpPrimer
GU7992231Dinucleotide(CA)714252..2651071  bpPrimer
GU7992232Dinucleotide(AC)1530269..2981071  bpPrimer
GU7992233Dinucleotide(TG)612563..5741071  bpPrimer
KT9518461Dinucleotide(AG)4692230..321521  bpPrimer
EU0165371Tetranucleotide(TCTG)936163..198573  bpPrimer
GU7992381Dinucleotide(TG)612729..7401371  bpPrimer
EU0165441Dinucleotide(GT)2244301..344809  bpPrimer
KF3564101Trinucleotide(ACG)5151..15101  bpPrimer
KF3564102Trinucleotide(CGT)51572..86101  bpPrimer
GU7992851Mononucleotide(A)2222945..9661294  bpPrimer
GU7992221Dinucleotide(AC)2040409..448828  bpPrimer
JF3176291Trinucleotide(CTT)8243..26392  bpPrimer
JF3176292Trinucleotide(AAG)824367..390392  bpPrimer
GU7992501Dinucleotide(TC)244882..129420  bpPrimer
JN2031101Dinucleotide(TG)214260..101520  bpPrimer
GU7991511Mononucleotide(T)1010742..751920  bpPrimer
EU0165401Tetranucleotide(GACA)728683..710804  bpPrimer
EU0165402Tetranucleotide(ACAG)832712..743804  bpPrimer
GU7992741Dinucleotide(AC)1734919..9521230  bpPrimer
JN2030991Dinucleotide(CA)1530174..203309  bpPrimer
JN2030992Tetranucleotide(CATC)520246..265309  bpPrimer
GU7991991Dinucleotide(CA)1938381..418723  bpPrimer
GU7991541Dinucleotide(GT)183612..47928  bpPrimer
GU7991542Tetranucleotide(GTCT)936325..360928  bpPrimer
GU7991543Dinucleotide(GT)1224401..424928  bpPrimer
GU7991544Dinucleotide(TG)1938803..840928  bpPrimer
KF4128101Trinucleotide(TCG)515444..458462  bpPrimer
GU7992761Trinucleotide(TTG)515267..281817  bpPrimer
GU7992762Mononucleotide(T)1212740..751817  bpPrimer
GQ9123201Trinucleotide(ACA)7214..24344  bpPrimer
GQ9123202Trinucleotide(TTG)824319..342344  bpPrimer
GU7992561Trinucleotide(AGG)515222..236714  bpPrimer
GU7992562Dinucleotide(AC)816410..425714  bpPrimer
GU7992563Trinucleotide(AGA)515607..621714  bpPrimer
GU7993181Trinucleotide(CTG)515105..119575  bpPrimer
GU7993182Dinucleotide(AC)918263..280575  bpPrimer
GU7993101Dinucleotide(CA)173429..62784  bpPrimer
GU7992931Dinucleotide(TG)2754383..436755  bpPrimer
GQ9123241Trinucleotide(ACA)8244..27181  bpPrimer
GQ9123242Trinucleotide(TTG)824156..179181  bpPrimer
JN2030951Dinucleotide(TG)1122499..520832  bpPrimer
JN2030952Dinucleotide(GA)816557..572832  bpPrimer
JN2031131Dinucleotide(AC)1224300..323555  bpPrimer
JF3176301Trinucleotide(CTT)8243..261046  bpPrimer
JF3176302Mononucleotide(T)121235..461046  bpPrimer
JF3176303Trinucleotide(TTA)618232..2491046  bpPrimer
JF3176304Dinucleotide(TG)612306..3171046  bpPrimer
JF3176305Trinucleotide(AAG)1133479..5111046  bpPrimer
JF3176306Trinucleotide(CTT)721515..5351046  bpPrimer
GQ9123271Dinucleotide(AC)2856159..214516  bpPrimer
GU7992861Dinucleotide(AC)91856..73561  bpPrimer
HM1493471Dinucleotide(TG)1122263..284611  bpPrimer
GU7992101Tetranucleotide(ATGG)832231..262697  bpPrimer
GU7991411Dinucleotide(TG)612303..3141048  bpPrimer
GU7991412Dinucleotide(CA)1836357..3921048  bpPrimer
KF4128041Trinucleotide(CTT)1442174..215218  bpPrimer
JN9443471Mononucleotide(A)1919594..6121166  bpPrimer
JN9443472Mononucleotide(G)1010793..8021166  bpPrimer
JN9443473Mononucleotide(A)1010840..8491166  bpPrimer
GU7993071Dinucleotide(GT)142811..381098  bpPrimer
GU7993072Dinucleotide(TG)4284130..2131098  bpPrimer
GU7993073Dinucleotide(AC)816397..4121098  bpPrimer
GU7993074Dinucleotide(GT)1122794..8151098  bpPrimer
EU0165341Dinucleotide(CA)1122297..318480  bpPrimer
EU0165342Dinucleotide(AC)1632402..433480  bpPrimer
GU7992271Dinucleotide(TG)1632797..828838  bpPrimer
KF4128111Trinucleotide(TCG)515159..173177  bpPrimer
KT9518521Trinucleotide(CAG)1030401..430592  bpPrimer
GU7991441Dinucleotide(GT)1632389..420791  bpPrimer
GU7991442Dinucleotide(GT)1326451..476791  bpPrimer
GU7991431Trinucleotide(ACA)515537..551819  bpPrimer
KF3564091Dinucleotide(TG)1530310..339455  bpPrimer
KF3564092Trinucleotide(TCG)515425..439455  bpPrimer
JN2031061Dinucleotide(GT)2448103..150386  bpPrimer
GU7992601Dinucleotide(AC)102086..105618  bpPrimer
JN2031191Dinucleotide(AC)2448232..279410  bpPrimer
EU0165391Tetranucleotide(TCTG)52083..102892  bpPrimer
GU7992441Dinucleotide(TG)1224479..502773  bpPrimer
GU7993201Dinucleotide(AC)142816..43650  bpPrimer
GU7993202Dinucleotide(GA)714369..382650  bpPrimer
GU7993203Mononucleotide(T)1313417..429650  bpPrimer
JN9443391Mononucleotide(A)10101307..13161340  bpPrimer
GU7991461Dinucleotide(TG)612337..348879  bpPrimer
GU7991462Mononucleotide(T)1414397..410879  bpPrimer
GU7992141Dinucleotide(TG)3264316..379886  bpPrimer
GU7992142Dinucleotide(TG)1734585..618886  bpPrimer
KT9518501Dinucleotide(CA)224433..76348  bpPrimer
KT9518502Dinucleotide(CA)387679..154348  bpPrimer
KT9518511Tetranucleotide(ATCT)728128..155492  bpPrimer
GU7992261Mononucleotide(T)1010668..6771065  bpPrimer
JN2031201Dinucleotide(GT)1530507..536764  bpPrimer
JN0488641Dinucleotide(GT)816977..9921077  bpPrimer
JN0488642Dinucleotide(GT)918994..10111077  bpPrimer
GU7992151Dinucleotide(AC)204016..55650  bpPrimer
GU7992152Mononucleotide(T)1313417..429650  bpPrimer
JN1598981Dinucleotide(AC)1224411..434745  bpPrimer
JN1598982Dinucleotide(AC)714437..450745  bpPrimer
JN1598983Mononucleotide(T)1111484..494745  bpPrimer
GU7992731Dinucleotide(AC)612108..1191125  bpPrimer
GU7992732Dinucleotide(TG)816221..2361125  bpPrimer
GU7992733Dinucleotide(GT)1020522..5411125  bpPrimer
GU7992734Dinucleotide(GT)612548..5591125  bpPrimer
GU7992735Dinucleotide(AC)816706..7211125  bpPrimer
GU7992736Dinucleotide(AC)1326843..8681125  bpPrimer
KF4128091Trinucleotide(CGT)515345..359362  bpPrimer
GU7993151Tetranucleotide(ATCA)520309..328776  bpPrimer
GQ9123231Trinucleotide(ACA)7214..24569  bpPrimer
GQ9123232Trinucleotide(TTG)824544..567569  bpPrimer
JN9443421Dinucleotide(AC)1530142..1711147  bpPrimer
KF4128051Trinucleotide(TCT)515135..149151  bpPrimer
GU7992281Mononucleotide(T)101031..40671  bpPrimer
GU7992282Dinucleotide(AC)1326562..587671  bpPrimer
GU7991571Trinucleotide(TTG)8249..32688  bpPrimer
GU7991572Trinucleotide(TTG)61836..53688  bpPrimer
JN2030961Dinucleotide(GT)2244199..242337  bpPrimer
GU7993131Dinucleotide(CA)714962..9751323  bpPrimer
GU7993132Trinucleotide(CAG)7211006..10261323  bpPrimer
GU7993061Dinucleotide(AC)714675..688938  bpPrimer
GU7992901Composite(TTG)11(T)1548706..753798  bpPrimer
GU7992691Dinucleotide(CA)2754596..649705  bpPrimer
GU7991801Dinucleotide(AC)3162629..690819  bpPrimer
KF3564051Trinucleotide(AAG)5151..15384  bpPrimer
KF3564052Trinucleotide(CTT)515355..369384  bpPrimer
GU7991671Dinucleotide(GT)612186..197785  bpPrimer
GU7991672Dinucleotide(AG)2142667..708785  bpPrimer
JN0488371Mononucleotide(A)1010296..305533  bpPrimer
EU0165431Dinucleotide(CA)2142358..399562  bpPrimer
GU7992331Mononucleotide(A)1111315..325433  bpPrimer
GU7992332Dinucleotide(AC)918335..352433  bpPrimer
JN2031021Trinucleotide(TTG)618237..254461  bpPrimer
JN2030941Dinucleotide(CA)2040227..266762  bpPrimer
GU7992291Trinucleotide(ACT)515465..479850  bpPrimer
GU7992292Dinucleotide(AC)612518..529850  bpPrimer
GU7992021Dinucleotide(CA)2346626..671799  bpPrimer
GU7991791Mononucleotide(T)2222403..424777  bpPrimer
EU0165351Dinucleotide(AC)163242..73254  bpPrimer
JN2031051Dinucleotide(AC)142858..85477  bpPrimer
JN0488571Mononucleotide(T)101056..651221  bpPrimer
JN0488572Dinucleotide(CT)612887..8981221  bpPrimer
JN0488573Dinucleotide(AC)1122915..9361221  bpPrimer
JN2031211Dinucleotide(CA)2244119..162537  bpPrimer
JN2031212Dinucleotide(CA)1224400..423537  bpPrimer
GU7993211Trinucleotide(CAG)515780..794822  bpPrimer
GU7991321Dinucleotide(CA)1734162..195748  bpPrimer
GU7991322Dinucleotide(GT)714326..339748  bpPrimer
GU7991701Dinucleotide(GT)3468285..352910  bpPrimer
GU7991702Trinucleotide(AGG)721623..643910  bpPrimer
KT9518541Dinucleotide(AC)1938478..515639  bpPrimer
GU7993091Dinucleotide(AG)612160..171777  bpPrimer
KF4128121Trinucleotide(GTC)515221..235240  bpPrimer
KT9518531Dinucleotide(TG)1122264..285361  bpPrimer
GU7991641Trinucleotide(CCT)7219..29883  bpPrimer
GU7991642Dinucleotide(CA)1020112..131883  bpPrimer
GU7991643Dinucleotide(AC)714143..156883  bpPrimer
GU7991644Dinucleotide(AC)714794..807883  bpPrimer
GU7991645Dinucleotide(AC)1122822..843883  bpPrimer
JN9443531Mononucleotide(T)1414684..6971037  bpPrimer
JN2031041Dinucleotide(CA)153046..75160  bpPrimer
GU7991471Dinucleotide(AC)1326553..578625  bpPrimer
GU7991472Dinucleotide(CA)612586..597625  bpPrimer
GU7991691Dinucleotide(CA)102067..86576  bpPrimer
GU7991692Dinucleotide(CA)173495..128576  bpPrimer
GU7992751Dinucleotide(GT)1122158..179827  bpPrimer
GU7992752Mononucleotide(T)1111609..619827  bpPrimer
GU7992753Dinucleotide(GT)612686..697827  bpPrimer
GU7992754Mononucleotide(A)1212757..768827  bpPrimer
GU7991841Trinucleotide(TTG)1133339..371631  bpPrimer
JN2031111Dinucleotide(TG)1632464..495691  bpPrimer
JN2031121Dinucleotide(AC)112245..66418  bpPrimer
JN2031122Dinucleotide(CA)3468266..333418  bpPrimer
GU7992071Dinucleotide(AC)2754630..683820  bpPrimer
JN2031071Dinucleotide(CA)2346116..161484  bpPrimer
GU7991621Mononucleotide(T)1010560..569603  bpPrimer
KF4128071Trinucleotide(CTT)515139..153156  bpPrimer
GU7993001Dinucleotide(AC)714782..7951256  bpPrimer
GU7991901Dinucleotide(TG)2040319..358590  bpPrimer
KT9518471Trinucleotide(CAT)515230..244791  bpPrimer
JN2031001Dinucleotide(GT)714206..219423  bpPrimer
JN2031251Dinucleotide(TG)2244521..564714  bpPrimer
GU7991581Dinucleotide(AC)612347..3581204  bpPrimer
GU7991582Dinucleotide(AC)612369..3801204  bpPrimer
JN2031271Dinucleotide(AC)816207..222574  bpPrimer
JN2030971Dinucleotide(GT)612168..179301  bpPrimer
GU7991351Dinucleotide(GT)816163..1781129  bpPrimer
GU7991352Mononucleotide(T)1515726..7401129  bpPrimer
KF3564041Trinucleotide(AAG)5151..15183  bpPrimer
KF3564042Trinucleotide(TCT)515153..167183  bpPrimer
GU7992091Tetranucleotide(CACG)936233..268893  bpPrimer
GU7991341Dinucleotide(GA)244862..109466  bpPrimer
GU7991342Dinucleotide(CA)612284..295466  bpPrimer
 
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