Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Pareuchiloglanis macrotrema [13]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
MN9478311Dinucleotide(GT)612121..132426  bpPrimer
MN9478301Mononucleotide(T)40401..40611  bpPrimer
MN9478302Dinucleotide(TG)1224313..336611  bpPrimer
MN9478231Dinucleotide(CA)9181344..13612050  bpPrimer
MN9478232Mononucleotide(G)12121684..16952050  bpPrimer
MN9478251Dinucleotide(TG)173446..791469  bpPrimer
MN9478252Dinucleotide(AC)1836486..5211469  bpPrimer
MN9478253Dinucleotide(AC)714643..6561469  bpPrimer
MN9478221Dinucleotide(AC)2142645..6861246  bpPrimer
MN9478211Dinucleotide(TC)2448179..2262436  bpPrimer
MN9478212Mononucleotide(T)10102232..22412436  bpPrimer
MN9478191Mononucleotide(A)1010495..5043355  bpPrimer
MN9478192Dinucleotide(TC)1224784..8073355  bpPrimer
MN9478193Mononucleotide(A)17171335..13513355  bpPrimer
MN9478241Dinucleotide(TG)173446..791469  bpPrimer
MN9478242Dinucleotide(AC)1836486..5211469  bpPrimer
MN9478243Dinucleotide(AC)714643..6561469  bpPrimer
MN9478291Dinucleotide(AC)2244131..174616  bpPrimer
MN9478292Dinucleotide(AG)918428..445616  bpPrimer
MN9478261Dinucleotide(GT)30601275..13341715  bpPrimer
MN9478262Dinucleotide(TG)11221693..17141715  bpPrimer
MN9478201Dinucleotide(TG)1122294..3152589  bpPrimer
MN9478202Tetranucleotide(TATT)624602..6252589  bpPrimer
MN9478203Dinucleotide(TG)14282166..21932589  bpPrimer
MN9478281Dinucleotide(GT)1836440..475721  bpPrimer
MN9478271Trinucleotide(GAT)154553..971006  bpPrimer
 
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