Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Alopias pelagicus [14]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
MN7194861Tetranucleotide(AGAT)1560400..459497  bpPrimer
MN7194911Dinucleotide(CT)2142256..297343  bpPrimer
MN7194871Tetranucleotide(CTTC)1456201..256310  bpPrimer
MN7194811Tetranucleotide(GATA)1976188..263782  bpPrimer
MN7194812Mononucleotide(G)1010587..596782  bpPrimer
MN7194831Tetranucleotide(ATAG)1768326..3931074  bpPrimer
MN7194821Tetranucleotide(GGAA)166490..153350  bpPrimer
MN7194791Tetranucleotide(ATCT)1768565..632880  bpPrimer
MN7194792Mononucleotide(T)1010794..803880  bpPrimer
MN7194851Tetranucleotide(ATCT)166451..114220  bpPrimer
MN7194852Tetranucleotide(ATCT)728119..146220  bpPrimer
MN7194891Dinucleotide(AC)234690..135427  bpPrimer
MN7194881Tetranucleotide(AGAT)1352272..323775  bpPrimer
MN7194801Tetranucleotide(GATA)1768895..9621411  bpPrimer
MN7194921Dinucleotide(GT)714179..192610  bpPrimer
MN7194922Dinucleotide(TG)2448194..241610  bpPrimer
MN7194901Dinucleotide(TG)2244306..349428  bpPrimer
MN7194841Tetranucleotide(GATA)1664178..241383  bpPrimer
MN7194842Tetranucleotide(AGAT)520267..286383  bpPrimer
 
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