Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Acanthurus triostegus [14]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
MT8761281Dinucleotide(CA)153027..56188  bpPrimer
MT8761311Dinucleotide(TG)163269..100218  bpPrimer
MT8761331Dinucleotide(GT)1224132..155197  bpPrimer
MT8761321Dinucleotide(GT)132666..91120  bpPrimer
MT8761341Dinucleotide(GT)132673..98142  bpPrimer
MT8761271Dinucleotide(TG)153050..79237  bpPrimer
MT8761241Dinucleotide(CA)142872..99164  bpPrimer
MT8761291Dinucleotide(AC)132638..63165  bpPrimer
MT8761292Dinucleotide(CA)61265..76165  bpPrimer
MT8761231Dinucleotide(TG)1428111..138176  bpPrimer
MT8761301Dinucleotide(CA)142874..101127  bpPrimer
MT8761221Dinucleotide(AC)132686..111189  bpPrimer
MT8761251Dinucleotide(GT)183653..88128  bpPrimer
MT8761351Dinucleotide(TG)193830..67187  bpPrimer
MT8761261Tetranucleotide(TCTG)1872173..244328  bpPrimer
 
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