Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Acanthopagrus schlegelii [213]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
HM3685111Trinucleotide(CTC)9276..3253  bpPrimer
HM3685141Dinucleotide(GT)255020..6988  bpPrimer
HM3685121Dinucleotide(TG)8161..1660  bpPrimer
MG8923811Pentanucleotide(TAGAA)945144..188477  bpPrimer
MG8923621Trinucleotide(GAG)721136..156445  bpPrimer
DQ2053481Trinucleotide(ACA)927151..177327  bpPrimer
KT8981991Dinucleotide(GT)612174..185452  bpPrimer
KT8981992Dinucleotide(GT)1122188..209452  bpPrimer
KY9109641Dinucleotide(GT)57114111..224866  bpPrimer
KY9109601Dinucleotide(AC)173492..125316  bpPrimer
KY9109602Dinucleotide(TC)1836190..225316  bpPrimer
KY9109603Dinucleotide(TC)1020227..246316  bpPrimer
GU1214301Dinucleotide(TG)1428274..301413  bpPrimer
GU1214302Dinucleotide(TG)1122304..325413  bpPrimer
GU1214191Dinucleotide(TG)1326155..180232  bpPrimer
GU2068911Dinucleotide(AC)244833..80280  bpPrimer
GU2068951Dinucleotide(CA)816241..256363  bpPrimer
KY9109501Dinucleotide(AC)163222..53302  bpPrimer
KY9109681c*(CA)28(A)24*79222..300898  bpPrimer
KY9109682Dinucleotide(GA)612538..549898  bpPrimer
KY9109683Dinucleotide(GC)714566..579898  bpPrimer
KY9109684Dinucleotide(CT)2142588..629898  bpPrimer
KY9109461Dinucleotide(CT)1530204..233296  bpPrimer
KY9109462Dinucleotide(CA)612248..259296  bpPrimer
KY9109463Dinucleotide(CA)1020262..281296  bpPrimer
KY9109464Dinucleotide(CA)612284..295296  bpPrimer
GU2068861Dinucleotide(CA)918171..188561  bpPrimer
GU2068862Dinucleotide(CA)1020191..210561  bpPrimer
MG8923701Trinucleotide(AGA)1236153..188424  bpPrimer
AB1028641Dinucleotide(CA)61221..32123  bpPrimer
AB1028642Dinucleotide(CA)61275..86123  bpPrimer
DQ2053501Mononucleotide(T)15151..15330  bpPrimer
DQ2053502Trinucleotide(TCC)927154..180330  bpPrimer
GU2068961Dinucleotide(CA)1530116..145308  bpPrimer
MG8923821Pentanucleotide(GTGTT)63099..128428  bpPrimer
MG8923501Dinucleotide(AC)1428155..182417  bpPrimer
KY9109431Dinucleotide(TG)142890..117422  bpPrimer
KY9109432Dinucleotide(GT)612272..283422  bpPrimer
KY9109433Dinucleotide(TG)612285..296422  bpPrimer
MH7822491Tetranucleotide(TAAA)832101..132232  bpPrimer
GU1214201Composite(AGG)8(AGA)64231..72410  bpPrimer
GU1214202Dinucleotide(CA)1428166..193410  bpPrimer
MG8923571Dinucleotide(AC)234694..139437  bpPrimer
KT8981951Mononucleotide(G)1010295..304531  bpPrimer
GU1661481Dinucleotide(CA)1326175..200351  bpPrimer
MG8923861Hexanucleotide(AGAAGG)954202..255431  bpPrimer
MG8923731Tetranucleotide(GAAG)52076..95395  bpPrimer
MG8923651Trinucleotide(ACA)927131..157457  bpPrimer
MH7822441Tetranucleotide(CTTT)62498..121220  bpPrimer
GU2069021Dinucleotide(GT)918265..282341  bpPrimer
EF1957301Tetranucleotide(CTGT)72865..92181  bpPrimer
MG8923781Pentanucleotide(TCTAT)630143..172417  bpPrimer
MN8143031Trinucleotide(GAG)515100..114214  bpPrimer
GU2068981Dinucleotide(GT)714176..189406  bpPrimer
GU2068982Dinucleotide(GT)918204..221406  bpPrimer
KT8981981Dinucleotide(AC)2040161..200287  bpPrimer
KT8981982Mononucleotide(T)1313241..253287  bpPrimer
MN8143041Dinucleotide(AC)71479..92191  bpPrimer
MN8143042Dinucleotide(CA)2754100..153191  bpPrimer
MG8923561Dinucleotide(TG)816214..229464  bpPrimer
FJ2349731Dinucleotide(GT)71421..34244  bpPrimer
FJ2349732Dinucleotide(TG)102064..83244  bpPrimer
FJ2349733Dinucleotide(GT)61287..98244  bpPrimer
FJ2349734Dinucleotide(GT)816101..116244  bpPrimer
FJ2349735Dinucleotide(GT)714119..132244  bpPrimer
FJ2349736Dinucleotide(TG)1530134..163244  bpPrimer
FJ2349737Dinucleotide(GT)612169..180244  bpPrimer
KY9109471Dinucleotide(GT)2040211..250330  bpPrimer
KY9109472Tetranucleotide(GTAT)936279..314330  bpPrimer
GU1661451Dinucleotide(TG)1632213..244311  bpPrimer
KY9109661Dinucleotide(CA)214272..113287  bpPrimer
KY9109662Dinucleotide(CT)2142136..177287  bpPrimer
KY9109663Dinucleotide(CT)1020180..199287  bpPrimer
GU2068821Trinucleotide(TGA)618423..440576  bpPrimer
GU2068822Dinucleotide(AC)714549..562576  bpPrimer
GU2069031Dinucleotide(GT)1836401..436458  bpPrimer
FJ2349721Dinucleotide(GT)81650..65117  bpPrimer
MG8923761Tetranucleotide(TTCT)93698..133433  bpPrimer
MG8923531Dinucleotide(AC)81684..99399  bpPrimer
KY9109651Dinucleotide(AG)244856..103289  bpPrimer
KY9109652Dinucleotide(TG)2550108..157289  bpPrimer
KY9109653Dinucleotide(TG)2142216..257289  bpPrimer
AB0950081Dinucleotide(AC)173420..5392  bpPrimer
GU2068991Composite(GT)11(GA)1246121..166342  bpPrimer
KY9109551Dinucleotide(CA)3774178..251413  bpPrimer
GU1214311Dinucleotide(GT)2346104..149382  bpPrimer
FJ2349751Dinucleotide(TG)163266..97369  bpPrimer
AB0950141Dinucleotide(GT)1224153..176556  bpPrimer
KY9109581Dinucleotide(TG)142890..117422  bpPrimer
KY9109582Dinucleotide(GT)612272..283422  bpPrimer
KY9109583Dinucleotide(TG)612285..296422  bpPrimer
MH7822471Tetranucleotide(TGTC)728101..128228  bpPrimer
KY9109451Dinucleotide(TG)1836191..226304  bpPrimer
AB0950111Dinucleotide(CA)214226..6787  bpPrimer
GU2068931Dinucleotide(CA)1836217..252285  bpPrimer
MG8923481Dinucleotide(CA)1020140..159435  bpPrimer
MG8923871Hexanucleotide(TCTGGT)636160..195474  bpPrimer
GU1214291Dinucleotide(AC)1428186..213338  bpPrimer
MG8923881Hexanucleotide(CAAGTA)53056..85385  bpPrimer
FJ2349801Dinucleotide(CA)163231..62495  bpPrimer
FJ2349802Dinucleotide(AC)132664..89495  bpPrimer
FJ2349803Composite(CA)45(TG)1311691..206495  bpPrimer
MG8923891Hexanucleotide(CCTGGT)530301..330391  bpPrimer
KY9109631Dinucleotide(CT)1836142..177328  bpPrimer
KY9109632Dinucleotide(CA)714188..201328  bpPrimer
KY9109633Dinucleotide(AC)612203..214328  bpPrimer
KY9109634Dinucleotide(AC)918217..234328  bpPrimer
GU1214161Dinucleotide(TC)1020110..129428  bpPrimer
GU1214162Dinucleotide(CA)1122190..211428  bpPrimer
MG8923591Trinucleotide(GAT)1133301..333402  bpPrimer
KY9109561Dinucleotide(TG)71446..59437  bpPrimer
KY9109562Dinucleotide(GT)142861..88437  bpPrimer
KY9109563Dinucleotide(GT)3060196..255437  bpPrimer
GU1661421Dinucleotide(GT)1122144..165419  bpPrimer
KY9109421Dinucleotide(TG)244873..120462  bpPrimer
GU2069061Trinucleotide(GAA)154529..73318  bpPrimer
GU2069062Trinucleotide(GAA)618121..138318  bpPrimer
GU2069063Trinucleotide(ACA)927164..190318  bpPrimer
GU1661411Dinucleotide(TG)1530100..129376  bpPrimer
DQ2053491Dinucleotide(TG)1122151..172322  bpPrimer
AB0950131Dinucleotide(AC)2448269..316442  bpPrimer
MH7822411Trinucleotide(GCA)618101..118218  bpPrimer
MH7822412Trinucleotide(GAG)515121..135218  bpPrimer
GU2068881Dinucleotide(AC)2244237..280326  bpPrimer
GU2068851Dinucleotide(GT)714440..453516  bpPrimer
MG8923521Dinucleotide(AC)122476..99399  bpPrimer
EF1957271Dinucleotide(TG)1530120..149169  bpPrimer
GU1214241Dinucleotide(AC)13267..32357  bpPrimer
GU1214242Dinucleotide(AC)1122184..205357  bpPrimer
GU1214243Dinucleotide(AC)1734234..267357  bpPrimer
MH7822421Tetranucleotide(TCTA)624101..124224  bpPrimer
MG8923801Pentanucleotide(GATAT)525301..325410  bpPrimer
FJ2349821Dinucleotide(AC)1326286..311791  bpPrimer
FJ2349822Dinucleotide(TG)4590313..402791  bpPrimer
FJ2349823Dinucleotide(TG)714487..500791  bpPrimer
FJ2349824Dinucleotide(GC)612661..672791  bpPrimer
MH7822461Tetranucleotide(ATGG)624101..124224  bpPrimer
KY9109441Trinucleotide(TGT)1030104..133417  bpPrimer
MG8923641Trinucleotide(TCA)824153..176456  bpPrimer
GU1214261Dinucleotide(AC)1938263..300426  bpPrimer
GU1214262Dinucleotide(CG)612308..319426  bpPrimer
EF1957291Dinucleotide(GT)61272..83196  bpPrimer
EF1957292Dinucleotide(TG)61285..96196  bpPrimer
EF1957293Dinucleotide(TG)612105..116196  bpPrimer
GU2069001Dinucleotide(GT)71485..98288  bpPrimer
GU1214141Dinucleotide(CA)142870..97351  bpPrimer
GU1214142Dinucleotide(CA)1938204..241351  bpPrimer
MG8923691Trinucleotide(AAT)824153..176450  bpPrimer
KT8982001Dinucleotide(AG)20407..46319  bpPrimer
KT8982002Dinucleotide(GT)1938146..183319  bpPrimer
FJ2349771Dinucleotide(CA)1632273..304369  bpPrimer
EF1957321Dinucleotide(GT)122489..112220  bpPrimer
GU1661431Dinucleotide(CA)1224177..200385  bpPrimer
KY9109731Dinucleotide(CA)4284279..362440  bpPrimer
GU1214251Dinucleotide(TG)306051..110250  bpPrimer
FJ2349621Composite(CA)12(TG)216619..84167  bpPrimer
KY9109721Dinucleotide(CA)1530130..159315  bpPrimer
DQ1888341Trinucleotide(CAC)515151..165315  bpPrimer
MG8923911Hexanucleotide(CGATGG)530102..131431  bpPrimer
MG8923741Tetranucleotide(AGAT)1040113..152409  bpPrimer
KY9109691Composite(AC)18(TCAC)97230..101263  bpPrimer
KY9109692Dinucleotide(CA)2448111..158263  bpPrimer
MG8923751Tetranucleotide(TCTA)156066..125403  bpPrimer
KY9109541Composite(AC)24(TC)219097..186333  bpPrimer
GU1214131Dinucleotide(CA)102068..87280  bpPrimer
GU1214132Dinucleotide(CA)132690..115280  bpPrimer
GU1214211Dinucleotide(AG)1938277..314441  bpPrimer
GU2068791Dinucleotide(TG)1020267..286393  bpPrimer
KY9109711Dinucleotide(AC)2040213..252287  bpPrimer
GU1661441Dinucleotide(TG)1122177..198566  bpPrimer
GU1661501Dinucleotide(CA)1428423..450529  bpPrimer
GU1661471Dinucleotide(TG)1326108..133475  bpPrimer
GU1214231Dinucleotide(GT)1938182..219327  bpPrimer
GU1214232Dinucleotide(GT)816222..237327  bpPrimer
GU1214271Dinucleotide(TG)918118..135439  bpPrimer
MG8923551Dinucleotide(TG)816197..212441  bpPrimer
KY9109521Dinucleotide(CT)1326263..288375  bpPrimer
KT8981971Dinucleotide(AC)16326..37529  bpPrimer
KT8981972Dinucleotide(CT)3876127..202529  bpPrimer
KT8981973Mononucleotide(T)1010487..496529  bpPrimer
MG8923831Pentanucleotide(TTGTT)525301..325450  bpPrimer
GU2068921Mononucleotide(T)1616135..150510  bpPrimer
GU2068922Dinucleotide(CA)2142366..407510  bpPrimer
MG8923791Pentanucleotide(TCTCC)525250..274488  bpPrimer
GU2068901Dinucleotide(AC)1122242..263501  bpPrimer
MG8923471Dinucleotide(AC)816301..316468  bpPrimer
MG8923721Tetranucleotide(TCTA)2288153..240445  bpPrimer
GU2068841Dinucleotide(GT)918355..372401  bpPrimer
GU1661491Dinucleotide(CA)1734225..258494  bpPrimer
MG8923461Dinucleotide(GT)918301..318447  bpPrimer
KY9109531Dinucleotide(AC)1122174..195205  bpPrimer
GU2068801Dinucleotide(CA)612107..118407  bpPrimer
KY9109701Dinucleotide(AC)1938175..212333  bpPrimer
MG8923491Dinucleotide(CA)183653..88388  bpPrimer
KT8981931Dinucleotide(AG)204022..61702  bpPrimer
KT8981932Trinucleotide(GAG)824252..275702  bpPrimer
MG8923671Trinucleotide(TCC)824156..179479  bpPrimer
KY9109511Dinucleotide(GA)2652125..176805  bpPrimer
KY9109512Dinucleotide(TG)918197..214805  bpPrimer
KY9109513Dinucleotide(TG)1734225..258805  bpPrimer
KY9109514Tetranucleotide(CTGT)728310..337805  bpPrimer
MG8923931Hexanucleotide(AGGAGA)530301..330380  bpPrimer
EF1957311Dinucleotide(TG)122472..95132  bpPrimer
GU2068831Trinucleotide(CTC)7219..29416  bpPrimer
MG8923941Hexanucleotide(AGTCAG)530301..330465  bpPrimer
GU2068941Dinucleotide(GT)918163..180459  bpPrimer
MG8923921Hexanucleotide(CAGGAC)636301..336362  bpPrimer
KY9109481Dinucleotide(GT)244860..107351  bpPrimer
KY9109482Dinucleotide(CT)3570222..291351  bpPrimer
GU1214281Dinucleotide(TG)2346234..279410  bpPrimer
GU1661461Dinucleotide(GT)1020133..152511  bpPrimer
GU1661462Dinucleotide(GT)918159..176511  bpPrimer
GU1214171Dinucleotide(TG)204097..136497  bpPrimer
MG8923581Dinucleotide(AC)918286..303458  bpPrimer
FJ2349651Dinucleotide(TG)681361..136534  bpPrimer
FJ2349652Dinucleotide(CT)1224447..470534  bpPrimer
GU1214151Dinucleotide(AC)1122244..265426  bpPrimer
MG8923851Pentanucleotide(TTAGA)945155..199444  bpPrimer
GU1661531Dinucleotide(GT)1224132..155430  bpPrimer
AB0950101Dinucleotide(TG)122455..7898  bpPrimer
GU1214121Dinucleotide(GT)612200..211300  bpPrimer
GU1214122Dinucleotide(GT)612214..225300  bpPrimer
GU1214123Dinucleotide(GT)1938228..265300  bpPrimer
EF1957281Trinucleotide(TAT)1030111..140221  bpPrimer
GU1661511Dinucleotide(GT)1632295..326492  bpPrimer
GU2069051Dinucleotide(GT)1122292..313392  bpPrimer
KY9109611Dinucleotide(CA)2040172..211298  bpPrimer
AB0950121Dinucleotide(CA)2958219..276415  bpPrimer
KT8981961Dinucleotide(GA)2754490..543550  bpPrimer
MN8143011Dinucleotide(CA)61221..32150  bpPrimer
MN8143012Dinucleotide(AC)61239..50150  bpPrimer
KY9109571Dinucleotide(CA)1224142..165425  bpPrimer
DQ2053471Trinucleotide(AGC)618151..168318  bpPrimer
GU2069041Dinucleotide(GT)714203..216549  bpPrimer
MG8923841Pentanucleotide(AGTAT)1155132..186477  bpPrimer
MG8923901Hexanucleotide(AGGGTT)530166..195447  bpPrimer
GU2068811Dinucleotide(AC)2040211..250420  bpPrimer
MG8923601Trinucleotide(AGA)824155..178452  bpPrimer
MH7822451Tetranucleotide(GATA)728101..128228  bpPrimer
KY9109621Dinucleotide(CT)2244283..326432  bpPrimer
MG8923541Dinucleotide(GT)918297..314489  bpPrimer
KT8981941Trinucleotide(GGA)824277..300541  bpPrimer
MG8923611Trinucleotide(CTT)1854301..354443  bpPrimer
GU2068871Dinucleotide(GT)1530255..284543  bpPrimer
GU1661521Dinucleotide(CA)1326234..259384  bpPrimer
KY9109491Dinucleotide(GT)1632102..133356  bpPrimer
MG8923771Pentanucleotide(AACAT)735205..239481  bpPrimer
MN8142991Trinucleotide(GAC)721100..120220  bpPrimer
AB0950091Dinucleotide(GT)122422..4569  bpPrimer
MG8923511Dinucleotide(AC)1122301..322425  bpPrimer
GU1214181Dinucleotide(GT)122490..113319  bpPrimer
MG8923661Trinucleotide(TCC)82483..106406  bpPrimer
MG8923681Trinucleotide(TCC)721111..131431  bpPrimer
GU2068971Dinucleotide(AC)1428355..382488  bpPrimer
GU2068972Dinucleotide(CA)714461..474488  bpPrimer
MN8143021Trinucleotide(AGA)72145..65165  bpPrimer
MN8142981Trinucleotide(CCA)721100..120178  bpPrimer
DQ2053461Trinucleotide(TCC)721151..171321  bpPrimer
GU1214221Dinucleotide(TG)612163..174373  bpPrimer
GU1214222Dinucleotide(TG)918177..194373  bpPrimer
GU1214223Dinucleotide(TG)1020197..216373  bpPrimer
GU2068771Dinucleotide(TG)714361..374423  bpPrimer
GU2068772Dinucleotide(GT)1020380..399423  bpPrimer
MN8143001Trinucleotide(CCA)824100..123223  bpPrimer
MH7822431Tetranucleotide(CAAC)728101..128228  bpPrimer
MG8923631Trinucleotide(TTG)82493..116416  bpPrimer
KY9109671Dinucleotide(GT)2142241..282499  bpPrimer
MG8923711Tetranucleotide(AAAT)520271..290428  bpPrimer
 
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