Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Neolissochilus hexagonolepis [26]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
MH7467471Tetranucleotide(ATAG)1248268..315459  bpPrimer
MH7467472Tetranucleotide(AAGG)520357..376459  bpPrimer
MH7467473Tetranucleotide(GAAG)520404..423459  bpPrimer
MH7467401Dinucleotide(GT)244843..90454  bpPrimer
MH7467591Dinucleotide(TG)2652107..158452  bpPrimer
MH7467511Dinucleotide(CA)3570259..328374  bpPrimer
MH7467361Dinucleotide(AG)2346199..244368  bpPrimer
MH7467431Tetranucleotide(ATAG)10401..40466  bpPrimer
MH7467432Tetranucleotide(ATAG)1144201..244466  bpPrimer
MH7467451Dinucleotide(TG)2856131..186446  bpPrimer
MH7467571Tetranucleotide(AAGA)1144406..449478  bpPrimer
MH7467421Trinucleotide(GAG)51541..55318  bpPrimer
MH7467422Tetranucleotide(AGAT)208095..174318  bpPrimer
MH7467423Tetranucleotide(GATG)728183..210318  bpPrimer
MH7467551Dinucleotide(CA)3264131..194291  bpPrimer
MH7467521Tetranucleotide(AGAT)197635..110466  bpPrimer
MH7467522Tetranucleotide(GATG)520276..295466  bpPrimer
MH7467523Tetranucleotide(GATG)1144367..410466  bpPrimer
MH7467371Dinucleotide(GT)3570178..247281  bpPrimer
MH7467381Dinucleotide(TG)2550227..276377  bpPrimer
MH7467491Dinucleotide(AG)3162113..174263  bpPrimer
MH7467441Dinucleotide(AC)2040198..237349  bpPrimer
MH7467601Dinucleotide(TG)2040364..403452  bpPrimer
MH7467561Dinucleotide(GT)204071..110465  bpPrimer
MH7467531Dinucleotide(AC)2448217..264437  bpPrimer
MH7467391Tetranucleotide(AGAT)114479..122413  bpPrimer
MH7467392Tetranucleotide(AGAT)520225..244413  bpPrimer
MH7467351Dinucleotide(GT)306088..147424  bpPrimer
MH7467352Mononucleotide(A)1111349..359424  bpPrimer
MH7467541Tetranucleotide(AGAT)2510050..149367  bpPrimer
MH7467461Tetranucleotide(AAGG)72840..67498  bpPrimer
MH7467462Tetranucleotide(AGAA)156098..157498  bpPrimer
MH7467481Tetranucleotide(AGAT)135283..134462  bpPrimer
MH7467482Trinucleotide(CTG)515281..295462  bpPrimer
MH7467483Dinucleotide(TG)1734313..346462  bpPrimer
MH7467411Dinucleotide(GT)3366153..218308  bpPrimer
MH7467501Tetranucleotide(GATA)15601..60478  bpPrimer
MH7467502Tetranucleotide(GATA)2288191..278478  bpPrimer
MH7467503Tetranucleotide(AGAT)1664412..475478  bpPrimer
MH7467581Trinucleotide(AAT)1545162..206429  bpPrimer
MH7467582Trinucleotide(ATT)515253..267429  bpPrimer
MH7467583Trinucleotide(TAT)618292..309429  bpPrimer
 
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