Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Danio rerio [10]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
HQ1166491Dinucleotide(TG)1428109..136302  bpPrimer
HQ1166471Dinucleotide(GT)918142..159219  bpPrimer
HQ1166472Dinucleotide(GT)612162..173219  bpPrimer
HQ1166473Dinucleotide(GT)714176..189219  bpPrimer
HQ1166501Dinucleotide(TG)275466..119214  bpPrimer
HQ1166481Tetranucleotide(TGTT)62450..73356  bpPrimer
HQ1166482Tetranucleotide(TTTG)624112..135356  bpPrimer
HQ1166483Tetranucleotide(TTAT)1352149..200356  bpPrimer
HQ1166484Tetranucleotide(AGAA)1664203..266356  bpPrimer
NM_1992721Mononucleotide(T)10102803..28123383  bpPrimer
NM_1992722Mononucleotide(T)14143186..31993383  bpPrimer
NM_1992723Mononucleotide(A)18183366..33833383  bpPrimer
NM_1316451Mononucleotide(A)33331676..17081708  bpPrimer
NM_0011051291Trinucleotide(TGT)618133..1503504  bpPrimer
NM_2056981Trinucleotide(CAG)6181213..12302101  bpPrimer
NM_2056982Dinucleotide(TA)6121761..17722101  bpPrimer
NM_2056983Mononucleotide(A)32322070..21012101  bpPrimer
NM_2010571Dinucleotide(CT)32641519..15822239  bpPrimer
NM_2010572Mononucleotide(A)21212219..22392239  bpPrimer
NM_0010059281Dinucleotide(AC)612391..4022971  bpPrimer
NM_0010059282Dinucleotide(CA)6121714..17252971  bpPrimer
NM_0010059283Dinucleotide(CA)6122557..25682971  bpPrimer
NM_0010059284Dinucleotide(AC)7142584..25972971  bpPrimer
NM_0010059285Dinucleotide(GT)16322769..28002971  bpPrimer
NM_0010059286Dinucleotide(CA)23462860..29052971  bpPrimer
NM_0010059287Mononucleotide(A)27272945..29712971  bpPrimer
 
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