Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Sperata seenghala [15]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
MF4898211Pentanucleotide(AGAAA)52578..102235  bpPrimer
MF4898311Trinucleotide(CAG)515240..254286  bpPrimer
MF4898241Trinucleotide(AAT)51591..105216  bpPrimer
MF4898291Trinucleotide(TAC)618111..128299  bpPrimer
MF4898281Dinucleotide(GT)163214..45164  bpPrimer
MF4898251Tetranucleotide(TTTG)114496..139230  bpPrimer
MF4898341Pentanucleotide(GAGAT)73571..105207  bpPrimer
MF4898331Trinucleotide(TGA)1236163..198230  bpPrimer
MF4898301Dinucleotide(GT)71438..51115  bpPrimer
MF4898231Tetranucleotide(ATGG)52070..89151  bpPrimer
MF4898232Tetranucleotide(GATG)93697..132151  bpPrimer
MF4898271Trinucleotide(TGA)515158..172199  bpPrimer
MF4898221Tetranucleotide(TTTG)114497..140203  bpPrimer
MF4898321Trinucleotide(CAG)515239..253285  bpPrimer
 
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