Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Istiophorus platypterus [23]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KY8065571Tetranucleotide(TCTT)135289..140713  bpPrimer
KY8065781Dinucleotide(TG)2448250..297584  bpPrimer
KY8065661Tetranucleotide(TGGA)832322..353840  bpPrimer
KY8065671Mononucleotide(A)101064..73526  bpPrimer
KY8065672Dinucleotide(AG)816250..265526  bpPrimer
KY8065673Dinucleotide(AC)3366380..445526  bpPrimer
KY8065771Mononucleotide(T)1212137..148695  bpPrimer
KY8065772Dinucleotide(TG)2448266..313695  bpPrimer
KY8065631Mononucleotide(G)101038..47540  bpPrimer
KY8065632Tetranucleotide(ATGA)832281..312540  bpPrimer
KY8065633Dinucleotide(TG)816443..458540  bpPrimer
KY8065634Dinucleotide(AC)1224462..485540  bpPrimer
KY8065635Composite(CA)6(AC)7(CA)1352488..539540  bpPrimer
KY8065681Dinucleotide(CA)3264358..421680  bpPrimer
KY8065751Dinucleotide(AC)2550423..472539  bpPrimer
KY8065601Tetranucleotide(ACAG)936332..367675  bpPrimer
KY8065711Dinucleotide(TG)2856177..232301  bpPrimer
KY8065741Dinucleotide(TG)2550275..324705  bpPrimer
KY8065742Dinucleotide(CA)612641..652705  bpPrimer
KY8065743Dinucleotide(AC)918658..675705  bpPrimer
KY8065701Dinucleotide(TG)2856498..553744  bpPrimer
KY8065581Tetranucleotide(CTAT)1144136..179847  bpPrimer
KY8065731Dinucleotide(TG)2652401..452798  bpPrimer
KY8065621Tetranucleotide(GTTT)83265..96449  bpPrimer
KY8065691Dinucleotide(AC)612213..224432  bpPrimer
KY8065692Dinucleotide(AC)3060315..374432  bpPrimer
KY8065641Mononucleotide(A)1717158..174657  bpPrimer
KY8065642Tetranucleotide(ATTT)832397..428657  bpPrimer
KY8065721Dinucleotide(CA)2754147..200513  bpPrimer
KY8065722Dinucleotide(AC)918366..383513  bpPrimer
KY8065591Tetranucleotide(CATC)1040352..391546  bpPrimer
KY8065611Mononucleotide(T)1010271..280637  bpPrimer
KY8065612Tetranucleotide(AGAC)832550..581637  bpPrimer
KY8065651Tetranucleotide(AGAC)93653..88405  bpPrimer
KY8065561Tetranucleotide(CACG)1560207..266560  bpPrimer
KY8065562Tetranucleotide(TTTA)520325..344560  bpPrimer
KY8065761Dinucleotide(TG)2550472..521596  bpPrimer
 
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