Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Mastacembelus armatus [72]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KX8587441Tetranucleotide(TCCA)62448..71208  bpPrimer
KX8587371Tetranucleotide(ATCA)52059..78118  bpPrimer
KX8587261Trinucleotide(AGG)92738..64175  bpPrimer
KX8587181Trinucleotide(CAG)92763..89154  bpPrimer
KX8587331Tetranucleotide(ATCC)728143..170201  bpPrimer
KX0931771Trinucleotide(TTA)927132..158292  bpPrimer
KX8587391Tetranucleotide(GATT)62465..88217  bpPrimer
KX8587251Trinucleotide(GCT)92790..116186  bpPrimer
KX8587221Trinucleotide(TAA)927150..176239  bpPrimer
KX8587411Tetranucleotide(CATC)62424..47170  bpPrimer
KX0931741Dinucleotide(AC)214227..68119  bpPrimer
KX8587161Trinucleotide(ATT)113342..74226  bpPrimer
KX0931701Dinucleotide(GT)25509..58119  bpPrimer
KX8587211Trinucleotide(TAA)927164..190251  bpPrimer
KU9867091Dinucleotide(TG)224460..103119  bpPrimer
KX8587301Trinucleotide(TTA)82445..68117  bpPrimer
KX8587351Tetranucleotide(TATT)728227..254317  bpPrimer
KX0931621Dinucleotide(GT)183684..119363  bpPrimer
KX8587471Tetranucleotide(TGAA)52063..82117  bpPrimer
KX8587291Trinucleotide(TAA)82458..81203  bpPrimer
KX8587311Tetranucleotide(AAGA)124869..116119  bpPrimer
KX0931651Dinucleotide(CA)214247..88119  bpPrimer
KX8587141Trinucleotide(CTT)927121..147181  bpPrimer
KX8587241Trinucleotide(TAT)92752..78119  bpPrimer
KX0931711Dinucleotide(GT)244854..101119  bpPrimer
KX8587481Tetranucleotide(ATGG)520199..218277  bpPrimer
KX0931761Dinucleotide(AC)204031..70119  bpPrimer
KX8587451Tetranucleotide(ATGG)624230..253339  bpPrimer
KX0931641Dinucleotide(GT)163287..118360  bpPrimer
KX0931781Trinucleotide(AAT)92784..110272  bpPrimer
KX0931782Dinucleotide(AC)612221..232272  bpPrimer
KX0931611Dinucleotide(TG)2244107..150378  bpPrimer
KX8587421Tetranucleotide(GATG)83276..107116  bpPrimer
KX8587151Trinucleotide(AAT)92715..41200  bpPrimer
KX8587152Dinucleotide(AC)612152..163200  bpPrimer
KX8587361Tetranucleotide(AAAG)728108..135205  bpPrimer
KX0931601Dinucleotide(CA)204067..106417  bpPrimer
KX0931591Dinucleotide(GT)142863..90119  bpPrimer
KX8587231Trinucleotide(CAG)927166..192266  bpPrimer
KX8587381Tetranucleotide(TTAT)624161..184245  bpPrimer
KX8587271Trinucleotide(TGT)92753..79218  bpPrimer
KX8587191Trinucleotide(CTA)92749..75190  bpPrimer
KX0931661Dinucleotide(CA)204045..84119  bpPrimer
KX8587171Trinucleotide(ATT)113341..73197  bpPrimer
KX8587431Tetranucleotide(ATCC)62473..96263  bpPrimer
KX0931581Dinucleotide(CA)173436..69119  bpPrimer
KX0931721Dinucleotide(TG)255066..115119  bpPrimer
KX8587321Tetranucleotide(ATAG)218435..118352  bpPrimer
KX8587201Trinucleotide(TTC)1030144..173196  bpPrimer
KX8587401Tetranucleotide(ATCC)520222..241283  bpPrimer
KX0931631Dinucleotide(CA)224475..118448  bpPrimer
KX0931691Dinucleotide(GT)275443..96119  bpPrimer
KX0931731Dinucleotide(CA)224453..96185  bpPrimer
KX8587491Tetranucleotide(AATA)62433..56181  bpPrimer
KX8587461Tetranucleotide(GATG)62445..68204  bpPrimer
KX0931671Dinucleotide(AC)193854..91119  bpPrimer
KX0931751Dinucleotide(CA)214278..119404  bpPrimer
KX8587281Trinucleotide(ATA)824187..210266  bpPrimer
KX0931681Dinucleotide(AC)224475..118457  bpPrimer
KY0758621Trinucleotide(TCA)82464..87212  bpPrimer
KY0758601Dinucleotide(GT)816108..123199  bpPrimer
KY0758711Trinucleotide(CAT)61895..112241  bpPrimer
KY0758641Dinucleotide(AC)71432..45185  bpPrimer
KY0758611Dinucleotide(TG)71455..68206  bpPrimer
KY0758591Trinucleotide(TGA)61872..89249  bpPrimer
KY0758581Dinucleotide(AC)61245..56230  bpPrimer
KY0758681Trinucleotide(CTC)61874..91245  bpPrimer
KY0758701Dinucleotide(GT)612157..168213  bpPrimer
KY0758671Trinucleotide(CAG)618152..169247  bpPrimer
KY0758651Trinucleotide(GAG)51593..107181  bpPrimer
KY0758691Dinucleotide(CA)91865..82226  bpPrimer
KY0758631Dinucleotide(TA)612113..124192  bpPrimer
KY0758661Trinucleotide(GAG)618115..132230  bpPrimer
 
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