Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Catla catla [59]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AJ2949551Dinucleotide(GT)2142237..278385  bpPrimer
GQ4617921Dinucleotide(AG)214224..65127  bpPrimer
GQ4617922Dinucleotide(GT)122477..100127  bpPrimer
AJ2949571Dinucleotide(AC)1326121..146297  bpPrimer
GQ4617901Dinucleotide(TG)163225..5697  bpPrimer
GQ4617951Dinucleotide(TG)153033..62114  bpPrimer
AJ0126571Tetranucleotide(ATTC)62443..66142  bpPrimer
GQ4617931Dinucleotide(AC)102052..71124  bpPrimer
GQ4617911Dinucleotide(CA)122431..54110  bpPrimer
GQ4617961Dinucleotide(TG)81641..56117  bpPrimer
AY2889231Dinucleotide(AC)153014..43125  bpPrimer
AY2889201Dinucleotide(TG)61286..97125  bpPrimer
AY2889202Dinucleotide(TG)816100..115125  bpPrimer
GQ4617891Dinucleotide(AC)183629..64123  bpPrimer
AF4892681Tetranucleotide(GATA)72846..7388  bpPrimer
GQ4617941Dinucleotide(TG)81639..54119  bpPrimer
AJ2949591Trinucleotide(ATT)51549..63220  bpPrimer
AJ2492331Dinucleotide(CA)61237..48194  bpPrimer
AJ2949561Dinucleotide(CA)173499..132392  bpPrimer
AJ2949562Dinucleotide(CA)816221..236392  bpPrimer
AJ1307231Mononucleotide(A)1111132..142360  bpPrimer
AJ1307232Dinucleotide(CA)612171..182360  bpPrimer
AY2915931Dinucleotide(CA)153011..40174  bpPrimer
AY2915932Dinucleotide(AC)612114..125174  bpPrimer
AY2915933Dinucleotide(AC)612134..145174  bpPrimer
AY2915934Dinucleotide(CA)612147..158174  bpPrimer
AJ2949581Dinucleotide(CA)7141..14125  bpPrimer
AJ2949582Tetranucleotide(TTTG)62459..82125  bpPrimer
AJ2949541Dinucleotide(GT)132623..48258  bpPrimer
AJ2949542Tetranucleotide(TATT)104070..109258  bpPrimer
AJ0126581Dinucleotide(TG)91891..108332  bpPrimer
KF9130151Dinucleotide(TG)132643..68156  bpPrimer
KF9130211Dinucleotide(TG)1530120..149185  bpPrimer
KF9130201Trinucleotide(GAT)72144..64146  bpPrimer
KF9130171Dinucleotide(AG)132674..99175  bpPrimer
KF9130071Dinucleotide(CA)71444..57157  bpPrimer
KF9130072Dinucleotide(GT)918105..122157  bpPrimer
KF9130081Pentanucleotide(TTATT)63084..113147  bpPrimer
KF9130091Dinucleotide(TG)122486..109178  bpPrimer
AF0453791Tetranucleotide(TCTA)936195..230398  bpPrimer
AF0453792Tetranucleotide(TCTA)1248252..299398  bpPrimer
KF9130191Dinucleotide(TG)612143..154183  bpPrimer
KF9130192Dinucleotide(GT)612171..182183  bpPrimer
KF9130161Dinucleotide(TC)61238..49161  bpPrimer
AF0453801Tetranucleotide(AGAT)832127..158300  bpPrimer
KF9130131Dinucleotide(GT)142869..96202  bpPrimer
AF0453821Tetranucleotide(CTAT)93694..129473  bpPrimer
AF0453822Tetranucleotide(CTAT)624143..166473  bpPrimer
AF0453823Tetranucleotide(CTAT)520177..196473  bpPrimer
AF0453824Tetranucleotide(CTAT)624210..233473  bpPrimer
AF0453825Tetranucleotide(CTAT)936261..296473  bpPrimer
AF0453826Tetranucleotide(TATC)936311..346473  bpPrimer
KF9130111Dinucleotide(TG)61243..54165  bpPrimer
KF9130181Dinucleotide(AG)714120..133205  bpPrimer
KF9130101Dinucleotide(CA)61244..55167  bpPrimer
KF9130141Dinucleotide(AG)61249..60246  bpPrimer
AF0453781Composite(CGTC)6(TATC)960105..164360  bpPrimer
AF0453811Mononucleotide(A)202034..53277  bpPrimer
AF0453812Tetranucleotide(ATCT)72895..122277  bpPrimer
KF9130121Dinucleotide(AC)61262..73165  bpPrimer
KX8675091Dinucleotide(AC)71498..111704  bpPrimer
KX8675092Dinucleotide(AC)612421..432704  bpPrimer
KX8675093Mononucleotide(A)1212603..614704  bpPrimer
KX8675151Dinucleotide(AG)1224332..355387  bpPrimer
KX8675121Dinucleotide(TG)1122650..671935  bpPrimer
KX8675161Dinucleotide(CA)612680..6911120  bpPrimer
KX8675141Dinucleotide(AT)714124..137252  bpPrimer
KX8675191Dinucleotide(CA)102061..801735  bpPrimer
KX8675192Mononucleotide(T)1212161..1721735  bpPrimer
KX8675193Mononucleotide(T)1111684..6941735  bpPrimer
KX8675181Dinucleotide(GT)61230..411397  bpPrimer
KJ6754411Dinucleotide(TG)163237..6876  bpPrimer
KX8675101Dinucleotide(TA)61257..681131  bpPrimer
KX8675102Dinucleotide(TA)122497..1201131  bpPrimer
KX8675103Tetranucleotide(TCTA)520263..2821131  bpPrimer
KX8675104Dinucleotide(TA)612674..6851131  bpPrimer
KX8675081Pentanucleotide(TTTAA)630312..3411273  bpPrimer
KX8675082Mononucleotide(A)10101078..10871273  bpPrimer
KX8675083Dinucleotide(AT)12241156..11791273  bpPrimer
KX8675071Mononucleotide(A)10101459..14682210  bpPrimer
KX8675072Dinucleotide(TG)9182132..21492210  bpPrimer
KX8675051Mononucleotide(T)1111369..3792010  bpPrimer
KX8675052Dinucleotide(AT)714382..3952010  bpPrimer
KX8675053Mononucleotide(A)1111884..8942010  bpPrimer
KX8675054Dinucleotide(AT)6121685..16962010  bpPrimer
KX8675055Trinucleotide(ATA)15451859..19032010  bpPrimer
KX8675056Trinucleotide(TAT)9271951..19772010  bpPrimer
KX8675057Mononucleotide(T)10101980..19892010  bpPrimer
KX8675058Mononucleotide(T)12121991..20022010  bpPrimer
KX8675171Dinucleotide(AC)61244..55882  bpPrimer
KX8675061Dinucleotide(TA)612338..3491157  bpPrimer
KX8675062Trinucleotide(TCA)8241042..10651157  bpPrimer
KX8675111Mononucleotide(T)10101615..16242113  bpPrimer
KX8675112Dinucleotide(AC)6121630..16412113  bpPrimer
KX8675131Dinucleotide(TA)61243..541049  bpPrimer
KX8675132Mononucleotide(A)1717908..9241049  bpPrimer
 
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