Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Stegostoma fasciatum [14]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
DQ4364861Tetranucleotide(AGAT)1664550..6131321  bpPrimer
DQ4364911Composite(TAGA)14(CAGA)1096191..286460  bpPrimer
DQ4364821Dinucleotide(CA)122429..52603  bpPrimer
DQ4364822Dinucleotide(CA)183655..90603  bpPrimer
DQ4364941Dinucleotide(CA)2754223..276532  bpPrimer
DQ4364811Dinucleotide(GT)1224245..268377  bpPrimer
DQ4364831Dinucleotide(TG)1836122..157415  bpPrimer
DQ4364851Dinucleotide(TG)163257..88169  bpPrimer
DQ4364852Composite(TG)6(AG)62497..120169  bpPrimer
DQ4364871Dinucleotide(AC)1428177..204546  bpPrimer
DQ4364841Dinucleotide(CA)3264107..170526  bpPrimer
DQ4364881Tetranucleotide(AGAT)1664194..257478  bpPrimer
DQ4364931Dinucleotide(TG)1020239..258455  bpPrimer
DQ4364932Dinucleotide(TG)612261..272455  bpPrimer
DQ4364901Tetranucleotide(AGAC)520305..3241028  bpPrimer
DQ4364902Tetranucleotide(AGAT)1352349..4001028  bpPrimer
DQ4364903Tetranucleotide(GATA)34136402..5371028  bpPrimer
DQ4364891Tetranucleotide(TATC)2392237..328532  bpPrimer
DQ4364892Tetranucleotide(TATC)1768333..400532  bpPrimer
DQ4364893Tetranucleotide(TCTA)624403..426532  bpPrimer
DQ4364921Dinucleotide(TG)2448256..303657  bpPrimer
DQ4364922Dinucleotide(TG)816308..323657  bpPrimer
 
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