Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Sphyrna lewini [26]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
FJ2368761Dinucleotide(CA)81667..82259  bpPrimer
FJ2368762Dinucleotide(AC)816110..125259  bpPrimer
FJ2368763Dinucleotide(CA)918185..202259  bpPrimer
FJ2368871Dinucleotide(TG)173492..125197  bpPrimer
FJ2368872Dinucleotide(TG)714130..143197  bpPrimer
FJ2368861Dinucleotide(TG)71445..58366  bpPrimer
FJ2368862Dinucleotide(TG)612277..288366  bpPrimer
FJ2368831Dinucleotide(CA)612136..147273  bpPrimer
FJ2368832Dinucleotide(AC)612155..166273  bpPrimer
FJ2368833Dinucleotide(CA)612230..241273  bpPrimer
FJ2368791Dinucleotide(GT)71482..95428  bpPrimer
FJ2368792Dinucleotide(TG)918101..118428  bpPrimer
FJ2368793Dinucleotide(GT)714122..135428  bpPrimer
FJ2368794Dinucleotide(GT)612138..149428  bpPrimer
FJ2368795Dinucleotide(GT)714178..191428  bpPrimer
FJ2368796Dinucleotide(GT)612250..261428  bpPrimer
FJ2368797Dinucleotide(GT)612266..277428  bpPrimer
FJ2368798Dinucleotide(GT)612358..369428  bpPrimer
FJ2368731Dinucleotide(CA)122426..49281  bpPrimer
FJ2368732Dinucleotide(CA)714193..206281  bpPrimer
FJ2368781Dinucleotide(AC)61243..54231  bpPrimer
FJ2368782Dinucleotide(CG)61299..110231  bpPrimer
FJ2368741Dinucleotide(GT)71477..90333  bpPrimer
FJ2368742Dinucleotide(GT)61297..108333  bpPrimer
FJ2368743Dinucleotide(GT)612115..126333  bpPrimer
FJ2368744Dinucleotide(GT)714193..206333  bpPrimer
FJ2368745Dinucleotide(GT)816221..236333  bpPrimer
FJ2368746Dinucleotide(GT)714275..288333  bpPrimer
FJ2368771Dinucleotide(TG)61286..97412  bpPrimer
FJ2368772Dinucleotide(TG)714122..135412  bpPrimer
FJ2368773Dinucleotide(TG)714328..341412  bpPrimer
FJ2368821Dinucleotide(GT)714124..137197  bpPrimer
FJ2368841Dinucleotide(TG)122431..54214  bpPrimer
FJ2368842Dinucleotide(GT)1122175..196214  bpPrimer
FJ2368751Dinucleotide(GT)183699..134252  bpPrimer
FJ2368851Dinucleotide(GT)61296..107396  bpPrimer
FJ2368852Dinucleotide(GT)918167..184396  bpPrimer
FJ2368853Dinucleotide(TG)612360..371396  bpPrimer
FJ2368811Dinucleotide(TG)71442..55437  bpPrimer
FJ2368812Dinucleotide(TG)714127..140437  bpPrimer
FJ2368813Dinucleotide(GT)918147..164437  bpPrimer
FJ2368814Dinucleotide(GT)612217..228437  bpPrimer
MN1372471Dinucleotide(CA)3060399..458720  bpPrimer
MN1372461Dinucleotide(CA)1530453..482738  bpPrimer
MN1372481Dinucleotide(CT)1428561..5881200  bpPrimer
MN1372411Dinucleotide(GA)1632329..360991  bpPrimer
MN1372431Dinucleotide(AC)163256..87754  bpPrimer
MN1372501Dinucleotide(AC)1428577..604911  bpPrimer
MN1372491Dinucleotide(AC)1428494..521915  bpPrimer
MN1372451Composite(GT)8(GA)1138307..344740  bpPrimer
MN1372441Dinucleotide(TG)163281..112745  bpPrimer
MN1372421Dinucleotide(GT)1530239..268757  bpPrimer
MN1372511Dinucleotide(GT)1428492..519805  bpPrimer
 
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