Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Rhincodon typus [18]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
EU1943691Dinucleotide(AC)1326101..126443  bpPrimer
FJ3574561Dinucleotide(CA)91859..76207  bpPrimer
EU1943751Trinucleotide(TCA)1030144..173566  bpPrimer
EU1943741Dinucleotide(TG)1326188..213595  bpPrimer
EU1943721Mononucleotide(G)1111189..199605  bpPrimer
EU1943722Dinucleotide(AG)2040203..242605  bpPrimer
EU1943723Mononucleotide(A)1010305..314605  bpPrimer
EU1943711Dinucleotide(GT)1734457..490871  bpPrimer
FJ3574511Dinucleotide(TG)142891..118230  bpPrimer
FJ3574501Dinucleotide(TG)122434..57221  bpPrimer
FJ3574502Dinucleotide(TG)81666..81221  bpPrimer
EU1943681Dinucleotide(GT)918132..149358  bpPrimer
EU1943682Mononucleotide(G)1212156..167358  bpPrimer
EU1943683Dinucleotide(GT)1530187..216358  bpPrimer
EU1943671Dinucleotide(TC)1020142..161303  bpPrimer
FJ3574541Dinucleotide(AG)418273..154200  bpPrimer
EU1943761Dinucleotide(TG)1326100..125295  bpPrimer
FJ3574521Dinucleotide(TC)142840..67155  bpPrimer
FJ3574522Trinucleotide(ACC)51595..109155  bpPrimer
EU1943731Dinucleotide(TG)91886..103440  bpPrimer
EU1943732Dinucleotide(TG)612112..123440  bpPrimer
EU1943733Dinucleotide(GT)816125..140440  bpPrimer
EU1943734Dinucleotide(GT)2244155..198440  bpPrimer
FJ3574531Dinucleotide(CA)2040100..139235  bpPrimer
FJ3574551Dinucleotide(CA)193885..122239  bpPrimer
EU1943701Dinucleotide(AC)1020199..218501  bpPrimer
FJ3574491Dinucleotide(TG)61234..45218  bpPrimer
FJ3574492Dinucleotide(GT)122459..82218  bpPrimer
 
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