Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Pristis pectinata [24]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KU5628471Dinucleotide(CT)816365..380566  bpPrimer
KU5628472Composite(TC)12(AC)1146428..473566  bpPrimer
KP8609431Dinucleotide(TG)3060120..1791209  bpPrimer
KU5628441Tetranucleotide(CTAT)3313278..209527  bpPrimer
KU5628442Tetranucleotide(ATCT)2288213..300527  bpPrimer
GU0663021Composite(TAGA)27(CAGA)19184426..609680  bpPrimer
KU5628481Tetranucleotide(CAGA)520143..162681  bpPrimer
KU5628482Tetranucleotide(GATA)2496185..280681  bpPrimer
KU5628483Composite(ATAG)18(ACAG)592454..545681  bpPrimer
KP8609391c*(TC)29(TCTA)27*164577..740829  bpPrimer
GU0662981Tetranucleotide(ATAG)29116470..585776  bpPrimer
KU5628461Tetranucleotide(GATA)39156404..5591434  bpPrimer
GU0663011Tetranucleotide(TCTA)5923674..309494  bpPrimer
GU0662991Dinucleotide(AC)1326764..7891092  bpPrimer
GU0662921Tetranucleotide(ATCT)61244125..368877  bpPrimer
KP8609381Dinucleotide(TG)2754111..164913  bpPrimer
GU0662961Tetranucleotide(ATAG)2392641..7321685  bpPrimer
KP8609441Dinucleotide(CA)3162142..203264  bpPrimer
GU0662951Composite(TGTC)16(TATC)14120105..224705  bpPrimer
KP8609411Dinucleotide(GT)1224650..673971  bpPrimer
KP8609412Dinucleotide(TG)612796..807971  bpPrimer
KU5628491Composite(ATAG)25(ACAG)16164250..4131588  bpPrimer
KU5628451Tetranucleotide(TGGA)1768396..463905  bpPrimer
KU5628452Tetranucleotide(TAGA)27108507..614905  bpPrimer
KU5628453Tetranucleotide(GATA)2080617..696905  bpPrimer
GU0662941Tetranucleotide(TATC)45180618..7971217  bpPrimer
KP8609421Dinucleotide(TC)714464..4771095  bpPrimer
KP8609422Composite(CT)22(CA)2390491..5801095  bpPrimer
GU0663001Tetranucleotide(TCTA)28112117..228394  bpPrimer
GU0662931Tetranucleotide(TATC)41164330..493529  bpPrimer
GU0662971Composite(AC)17(TA)64645..90200  bpPrimer
KP8609401Dinucleotide(AC)1530486..515837  bpPrimer
 
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