Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Mobula japanica [12]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
JF8009131Dinucleotide(AC)316246..107311  bpPrimer
JF8009181Dinucleotide(AC)244866..113128  bpPrimer
JF8009211Tetranucleotide(TATC)624110..133197  bpPrimer
JF8009221Tetranucleotide(ATAG)10401..40236  bpPrimer
JF8009161Dinucleotide(AC)112221..4288  bpPrimer
JF8009171Dinucleotide(CA)132622..47186  bpPrimer
JF8009121Dinucleotide(AC)81669..84182  bpPrimer
JF8009141Dinucleotide(AC)163250..8184  bpPrimer
JF8009151Dinucleotide(GT)142860..87187  bpPrimer
JF8009231Tetranucleotide(AGAT)8321..32249  bpPrimer
JF8009232Tetranucleotide(AGAT)52037..56249  bpPrimer
 
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