Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Isurus oxyrinchus [40]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AB7623091Dinucleotide(AC)1326228..253299  bpPrimer
AB7623021Trinucleotide(CAT)824194..217312  bpPrimer
AB5872981Dinucleotide(AC)112238..59116  bpPrimer
KJ4544391Dinucleotide(GA)918166..183222  bpPrimer
AB7623081Dinucleotide(AC)122493..116569  bpPrimer
AF4267371Dinucleotide(AC)54108372..479842  bpPrimer
AB5872941Dinucleotide(CA)183636..71110  bpPrimer
AB7623011Dinucleotide(TA)81612..27354  bpPrimer
AB7623012Tetranucleotide(ACCT)728226..253354  bpPrimer
KJ4544361Composite(GATA)5(GACA)540236..275495  bpPrimer
KJ4544362Tetranucleotide(AGAT)26104279..382495  bpPrimer
AB5872971Dinucleotide(GT)204087..126153  bpPrimer
AB7622961Dinucleotide(AC)1428405..432521  bpPrimer
AB7623041Trinucleotide(TGG)824252..275307  bpPrimer
AB5873001Dinucleotide(CA)1734122..155195  bpPrimer
KJ4544341Composite(TG)10(TATG)1060103..162247  bpPrimer
AB7623071Trinucleotide(GGA)82472..95276  bpPrimer
AB7623051Tetranucleotide(TCAC)728194..221509  bpPrimer
KJ4544371Dinucleotide(AG)173466..99155  bpPrimer
KJ4544351Dinucleotide(AC)142890..117207  bpPrimer
AB5872991Dinucleotide(CA)122493..116284  bpPrimer
AB7623001Dinucleotide(AC)163298..129295  bpPrimer
AB7622971Dinucleotide(CA)1632342..373532  bpPrimer
AB7622981Pentanucleotide(GGGAG)630111..140343  bpPrimer
AB7622982Dinucleotide(AC)918297..314343  bpPrimer
KJ4544311Composite(TCTG)5(TCTA)178864..151374  bpPrimer
KJ4544312Tetranucleotide(ATCT)832240..271374  bpPrimer
KJ4544401Tetranucleotide(ATAG)1456121..176250  bpPrimer
AB7623061Dinucleotide(AC)163250..81177  bpPrimer
KJ4544301Dinucleotide(AC)295853..110246  bpPrimer
AB7774311Tetranucleotide(CTCA)728240..267445  bpPrimer
AB7774312Mononucleotide(G)1111396..406445  bpPrimer
AB7774313Trinucleotide(GGA)515421..435445  bpPrimer
AB7622991Dinucleotide(CA)1326237..262417  bpPrimer
AB5872931Dinucleotide(TG)91843..60180  bpPrimer
AB5872932Dinucleotide(TG)81663..78180  bpPrimer
AB5872933Dinucleotide(TG)91881..98180  bpPrimer
AB5872934Dinucleotide(TG)1020103..122180  bpPrimer
AB5872935Dinucleotide(TG)714143..156180  bpPrimer
AF4230611Dinucleotide(AC)1632463..494641  bpPrimer
AF4267381Dinucleotide(CA)1428335..362454  bpPrimer
AF4267382Dinucleotide(AC)612364..375454  bpPrimer
KJ4544331Tetranucleotide(ATCT)2610466..169252  bpPrimer
AF4267361Dinucleotide(GT)816204..219416  bpPrimer
KJ4544321Tetranucleotide(TATC)218431..114326  bpPrimer
KJ4544322Tetranucleotide(ATCT)1872116..187326  bpPrimer
KJ4544323Tetranucleotide(ATCT)1872192..263326  bpPrimer
KJ4544381c*(TC)7(TCTA)6*(TC)187235..106199  bpPrimer
AB5872951Dinucleotide(AC)612124..135186  bpPrimer
AF4267341Composite(TG)19(AG)85419..72153  bpPrimer
AB7623031Dinucleotide(AC)1224224..247480  bpPrimer
AF4267351Dinucleotide(GA)1938171..208672  bpPrimer
AB5872961Dinucleotide(CA)1632158..189205  bpPrimer
 
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