Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Himantura chaophraya [11]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KC1114241Dinucleotide(CA)346823..90107  bpPrimer
KC1114291Dinucleotide(TG)295819..7693  bpPrimer
KC1114281Tetranucleotide(CTCA)52022..41122  bpPrimer
KC1114282Dinucleotide(CA)163246..77122  bpPrimer
KC1114283Dinucleotide(AC)81691..106122  bpPrimer
KC1114221Dinucleotide(TG)132616..4176  bpPrimer
KC1114311Dinucleotide(AC)448822..109129  bpPrimer
KC1114312Dinucleotide(CA)612113..124129  bpPrimer
KC1114261Dinucleotide(TC)275416..6984  bpPrimer
KC1114231Composite(TC)7(AC)256415..7893  bpPrimer
KC1114251Dinucleotide(CT)173417..5081  bpPrimer
KC1114271Composite(GT)13(GA)94421..6484  bpPrimer
KC1114301Dinucleotide(GT)428422..105121  bpPrimer
KC1114321Composite(CACG)8(CA)135821..7893  bpPrimer
 
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