Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Hexanchus griseus [38]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KF8944451Trinucleotide(CCA)82447..70511  bpPrimer
FJ4279791Dinucleotide(TC)132697..122220  bpPrimer
KF8944471Dinucleotide(TG)1428202..229513  bpPrimer
KF8944341Dinucleotide(AG)122461..84696  bpPrimer
FJ4279841Dinucleotide(TC)61277..88286  bpPrimer
FJ4279842Dinucleotide(CT)612156..167286  bpPrimer
KF8944411Dinucleotide(GA)102049..68500  bpPrimer
KF8944481Dinucleotide(AT)1428239..266507  bpPrimer
FJ4279731Dinucleotide(CA)142828..55156  bpPrimer
KF8944351Dinucleotide(TC)1224294..317465  bpPrimer
KF8944401Dinucleotide(CT)714195..208526  bpPrimer
FJ4279761Trinucleotide(TCC)51564..78181  bpPrimer
FJ4279821Dinucleotide(AG)7141..1499  bpPrimer
FJ4279822Dinucleotide(GA)61269..8099  bpPrimer
FJ4279741Dinucleotide(GT)142841..68131  bpPrimer
KF8944461Dinucleotide(TA)816330..345514  bpPrimer
FJ4279811Tetranucleotide(GAGC)83298..129267  bpPrimer
KF8944531Tetranucleotide(TTAT)728289..316623  bpPrimer
KF8944381Dinucleotide(GA)612225..236999  bpPrimer
KF8944441Trinucleotide(GTT)927101..127443  bpPrimer
FJ4279771Dinucleotide(TC)61269..80176  bpPrimer
FJ4279801Dinucleotide(CT)112256..77179  bpPrimer
FJ4279802Dinucleotide(CT)61280..91179  bpPrimer
FJ4279803Dinucleotide(TC)81697..112179  bpPrimer
KF8944371Dinucleotide(TC)10201048..10671855  bpPrimer
KF8944372Dinucleotide(AC)7141218..12311855  bpPrimer
KF8944373Dinucleotide(GA)8161327..13421855  bpPrimer
KF8944374Dinucleotide(AG)11221400..14211855  bpPrimer
KF8944491Dinucleotide(AG)612713..724942  bpPrimer
KF8944321Trinucleotide(ATA)618800..8171912  bpPrimer
KF8944301Dinucleotide(AG)10202895..29144746  bpPrimer
KF8944521Dinucleotide(AG)1224147..170496  bpPrimer
FJ4279831Dinucleotide(CT)71431..4479  bpPrimer
FJ4279781Dinucleotide(AG)11226..27121  bpPrimer
FJ4279782Dinucleotide(AG)71440..53121  bpPrimer
FJ4279783Dinucleotide(AG)102066..85121  bpPrimer
FJ4279784Dinucleotide(AG)816106..121121  bpPrimer
KF8944421Trinucleotide(AAC)1030622..6511031  bpPrimer
 
Home  CABin home  Support &Feedback
Copyright© NBFGR (ICAR), All Rights Reserved.
Designed and developed by NABG team, NBFGR, Lucknow