Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Galeocerdo cuvier [31]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KT5982631Dinucleotide(AC)81633..48255  bpPrimer
KT5982632Dinucleotide(AC)1020146..165255  bpPrimer
KT5982651Dinucleotide(AC)153043..72192  bpPrimer
KP3008071Dinucleotide(TC)81678..93190  bpPrimer
KP3008072Dinucleotide(CT)714153..166190  bpPrimer
KP1170361Dinucleotide(CA)1224425..448516  bpPrimer
KP1170301Dinucleotide(CA)1326140..165660  bpPrimer
KP3008111Dinucleotide(CA)142850..77277  bpPrimer
KP3008112Dinucleotide(AC)612137..148277  bpPrimer
KP3008061Dinucleotide(AG)71444..57206  bpPrimer
KP1170331Tetranucleotide(TAGA)2080170..249277  bpPrimer
KP1170341Dinucleotide(TC)1734188..221430  bpPrimer
KT5982661Dinucleotide(GT)1020228..247418  bpPrimer
KT5982641Dinucleotide(CT)81690..105298  bpPrimer
KT5982642Dinucleotide(CT)612144..155298  bpPrimer
KT5982643Dinucleotide(CA)612193..204298  bpPrimer
KP3008051Dinucleotide(AG)714104..117338  bpPrimer
KP1170281Dinucleotide(TC)1428499..526637  bpPrimer
KT5982691Dinucleotide(GT)1122344..365441  bpPrimer
KT5982711Trinucleotide(CCT)515291..305488  bpPrimer
KP3008121Tetranucleotide(GTGA)624274..297366  bpPrimer
KP1170321Tetranucleotide(GATA)1560191..250655  bpPrimer
KP1170322Dinucleotide(AG)714298..311655  bpPrimer
KP1170351Dinucleotide(GT)1938717..754829  bpPrimer
KT5982671Composite(CA)11(CT)83855..92482  bpPrimer
KP1170291Dinucleotide(AG)132634..59344  bpPrimer
KP1170311Tetranucleotide(TCTA)228826..113216  bpPrimer
KP3008101Dinucleotide(AC)112243..64208  bpPrimer
KT5982681Dinucleotide(TG)1530208..237412  bpPrimer
KP3008091Dinucleotide(CT)112237..58368  bpPrimer
KT5982701Dinucleotide(TG)102054..73408  bpPrimer
KP3008081Dinucleotide(TC)91876..93309  bpPrimer
 
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