Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Dasyatis zugei [10]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KF5552571Dinucleotide(TC)918255..272649  bpPrimer
KF5552572Dinucleotide(CT)612274..285649  bpPrimer
KF5552573Dinucleotide(CT)1122288..309649  bpPrimer
KF5552541Dinucleotide(AC)59118180..297811  bpPrimer
KF5552521Dinucleotide(AC)2652170..221430  bpPrimer
KF5552491Dinucleotide(TG)612419..430520  bpPrimer
KF5552561Dinucleotide(GA)1428214..241410  bpPrimer
KF5552562Composite(GA)26(GT)766244..309410  bpPrimer
KF5552551Dinucleotide(CA)91838..55352  bpPrimer
KF5552552Dinucleotide(AC)2448159..206352  bpPrimer
KF5552481Dinucleotide(CA)2448110..157291  bpPrimer
KF5552482Dinucleotide(CA)714159..172291  bpPrimer
KF5552483Dinucleotide(CA)612175..186291  bpPrimer
KF5552484Dinucleotide(CA)714189..202291  bpPrimer
KF5552485Dinucleotide(AC)1020204..223291  bpPrimer
KF5552501Dinucleotide(AC)1632360..391569  bpPrimer
KF5552531Dinucleotide(AC)183667..102720  bpPrimer
KF5552511Dinucleotide(CT)612291..302472  bpPrimer
KF5552512Dinucleotide(CT)816311..326472  bpPrimer
KF5552513Composite(CT)8(CA)628337..364472  bpPrimer
KF5552514Dinucleotide(AC)1530369..398472  bpPrimer
KF5552515Dinucleotide(AC)1020413..432472  bpPrimer
 
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