Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Chiloscyllium plagiosum [17]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
EU6619041Dinucleotide(TC)1326332..357665  bpPrimer
EU6619011Dinucleotide(GT)71478..91265  bpPrimer
EU6619012Dinucleotide(GT)81696..111265  bpPrimer
EU6619013Dinucleotide(TG)714113..126265  bpPrimer
EU6619014Dinucleotide(TG)612133..144265  bpPrimer
EU6618951Dinucleotide(GT)918222..239508  bpPrimer
EU6618952Dinucleotide(GT)1122246..267508  bpPrimer
EU6618931Dinucleotide(GT)81618..33583  bpPrimer
EU6618932Hexanucleotide(GTGTGC)53038..67583  bpPrimer
EU6618933Dinucleotide(GT)102078..97583  bpPrimer
EU6619021Dinucleotide(AC)714486..499891  bpPrimer
EU6619022Dinucleotide(AC)816514..529891  bpPrimer
EU6618981Dinucleotide(AC)142844..71531  bpPrimer
EU6619031Dinucleotide(GT)1326274..299349  bpPrimer
EU6618971Dinucleotide(CA)132649..74541  bpPrimer
EU6618972Dinucleotide(AC)816163..178541  bpPrimer
EU6618961Dinucleotide(CA)112263..84499  bpPrimer
EU6619001Dinucleotide(GT)918377..394588  bpPrimer
EU6619002Dinucleotide(TG)1224545..568588  bpPrimer
EU6618991Dinucleotide(AC)612447..458539  bpPrimer
EU6618992Dinucleotide(CA)918464..481539  bpPrimer
EU6618941Dinucleotide(AC)1530181..210463  bpPrimer
MT2374451Dinucleotide(AG)918189..206548  bpPrimer
MT2374411Dinucleotide(AG)132626..51452  bpPrimer
MT2374431Dinucleotide(TC)122495..118200  bpPrimer
MT2374441Dinucleotide(CT)2856160..215393  bpPrimer
MT2374421Tetranucleotide(TGTC)832140..171422  bpPrimer
MT2374422Tetranucleotide(TCTA)25100178..277422  bpPrimer
MT2374423Tetranucleotide(ATCT)2288297..384422  bpPrimer
MT2374424Tetranucleotide(ATCT)520389..408422  bpPrimer
 
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