Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Carcharias taurus [14]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
EF5616451Tetranucleotide(TCTT)2080320..399754  bpPrimer
EF5616452Tetranucleotide(CTTT)26104489..592754  bpPrimer
KC4560651Tetranucleotide(ATCT)1560311..3701119  bpPrimer
KC4560652Tetranucleotide(GTCT)728387..4141119  bpPrimer
EF4501321Tetranucleotide(TATC)3212897..224701  bpPrimer
KC4560661Tetranucleotide(AGAT)1768306..373516  bpPrimer
EF4501291Dinucleotide(AC)816243..258825  bpPrimer
EF4501292Composite(CA)7(AC)932260..291825  bpPrimer
EF4501331Tetranucleotide(GATA)28112107..218762  bpPrimer
KC4560691Tetranucleotide(CTAT)1560707..766884  bpPrimer
KC4560681Tetranucleotide(GATG)520170..189528  bpPrimer
KC4560682Tetranucleotide(GATA)26104238..341528  bpPrimer
EF4501301Dinucleotide(TG)2040356..395981  bpPrimer
EF4501341Dinucleotide(AG)11223..24637  bpPrimer
EF4501342Dinucleotide(AG)1224386..409637  bpPrimer
KC4560671Tetranucleotide(TAGA)28112119..230414  bpPrimer
KC4560672Tetranucleotide(AGAC)832240..271414  bpPrimer
EF4501311Composite(TAGA)16(CAGA)792345..436797  bpPrimer
AF4230601Dinucleotide(AC)918439..456575  bpPrimer
EF4501281Dinucleotide(GA)6127..18230  bpPrimer
EF4501282Dinucleotide(GA)142823..50230  bpPrimer
EF4501283Dinucleotide(GA)193853..90230  bpPrimer
EF4501284Dinucleotide(AG)153092..121230  bpPrimer
 
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