Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Carcharhinus sorrah [27]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KU5012721Dinucleotide(CA)112267..88300  bpPrimer
KU5012711Dinucleotide(AC)122480..103301  bpPrimer
AY5452091Dinucleotide(CA)91854..71429  bpPrimer
AY5452092Dinucleotide(AG)1020220..239429  bpPrimer
KU5012821Dinucleotide(AG)102081..100286  bpPrimer
AY5452061Dinucleotide(CA)2550211..260420  bpPrimer
AY5452062Dinucleotide(CT)612263..274420  bpPrimer
KU5012791Dinucleotide(AG)112252..73300  bpPrimer
AY5452151Dinucleotide(TG)1938263..300366  bpPrimer
KU5012841Dinucleotide(TA)102057..76301  bpPrimer
KU5012701Dinucleotide(AC)112257..78301  bpPrimer
AY5452121Composite(GA)18(CA)1464386..449701  bpPrimer
KU5012761Dinucleotide(GA)122452..75300  bpPrimer
AY5452141Dinucleotide(AC)1428553..580660  bpPrimer
KU5012691Dinucleotide(AC)132681..106301  bpPrimer
KU5012831Dinucleotide(AG)112256..77300  bpPrimer
AY5452071Dinucleotide(AC)714343..356469  bpPrimer
AY5452072Dinucleotide(AC)1530359..388469  bpPrimer
KU5012811Dinucleotide(AC)102073..92270  bpPrimer
KU5012741Dinucleotide(CA)102061..80301  bpPrimer
AY5452111Dinucleotide(CA)2856170..225802  bpPrimer
KU5012731Dinucleotide(AC)112253..74299  bpPrimer
KU5012732Mononucleotide(T)1111266..276299  bpPrimer
AY5452051Dinucleotide(GT)1122150..171406  bpPrimer
KU5012781Dinucleotide(GA)122476..99300  bpPrimer
KU5012751Dinucleotide(AG)102053..72301  bpPrimer
AY5452131Dinucleotide(CA)3876497..572764  bpPrimer
AY5452101Dinucleotide(CA)1122205..226263  bpPrimer
KU5012801Dinucleotide(AC)122457..80301  bpPrimer
KU5012771Dinucleotide(AG)112246..67300  bpPrimer
AY5452081Dinucleotide(AC)2142212..253375  bpPrimer
 
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