Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Carcharhinus limbatus [51]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AY2642791Dinucleotide(TG)91890..107153  bpPrimer
KU5012681Dinucleotide(AC)132674..99251  bpPrimer
AY7661431Mononucleotide(A)1111922..9321067  bpPrimer
AY2642731Dinucleotide(AC)1020234..253344  bpPrimer
AY2642771Dinucleotide(TG)153067..96150  bpPrimer
KU5012601Dinucleotide(AC)132664..89251  bpPrimer
AY7661311Mononucleotide(A)1111923..9331070  bpPrimer
AY7661401Mononucleotide(A)1111922..9321067  bpPrimer
AY7661461Mononucleotide(A)1111923..9331068  bpPrimer
AY2642831Dinucleotide(AG)71446..59200  bpPrimer
AY2642832Dinucleotide(AG)1020104..123200  bpPrimer
AY2642833Dinucleotide(AG)612144..155200  bpPrimer
AY7661341Mononucleotide(A)1111922..9321067  bpPrimer
AY7661421Mononucleotide(A)1111922..9321067  bpPrimer
KU5012651Dinucleotide(AG)112249..70250  bpPrimer
AY7661231Mononucleotide(A)1111923..9331068  bpPrimer
KU5012661Dinucleotide(GA)132642..67247  bpPrimer
AY7661321Mononucleotide(A)1111923..9331070  bpPrimer
KU5012611Dinucleotide(AC)132655..80251  bpPrimer
AY2642761Dinucleotide(AG)1122128..149256  bpPrimer
AY2642681Dinucleotide(GA)1020114..133191  bpPrimer
AY7661281Mononucleotide(A)1111922..9321067  bpPrimer
AY2642801Dinucleotide(TG)285628..83215  bpPrimer
AY7661411Mononucleotide(A)1111922..9321067  bpPrimer
KU5012631Dinucleotide(GA)132680..105251  bpPrimer
AY2642691Dinucleotide(CA)204053..92192  bpPrimer
AY7661301Mononucleotide(A)1111923..9331070  bpPrimer
AY2642701Dinucleotide(AC)91855..72194  bpPrimer
KU5012591Dinucleotide(CA)122473..96251  bpPrimer
AY7661391Mononucleotide(A)1111923..9331068  bpPrimer
AY7661251Mononucleotide(A)1111923..9331070  bpPrimer
AY7661371Mononucleotide(A)1111923..9331068  bpPrimer
KU5012641Dinucleotide(GA)132665..90251  bpPrimer
AY7661451Mononucleotide(A)1111922..9321067  bpPrimer
AY7661291Mononucleotide(A)1111922..9321067  bpPrimer
AY7661441Mononucleotide(A)1111922..9321067  bpPrimer
AY2642741Dinucleotide(AG)91881..98136  bpPrimer
AY2642711Dinucleotide(AC)1938110..147278  bpPrimer
KU5012581Dinucleotide(CA)91873..90250  bpPrimer
KU5012582Dinucleotide(AC)1734140..173250  bpPrimer
AY2642821Dinucleotide(AC)346891..158187  bpPrimer
AY7661241Mononucleotide(A)1111923..9331070  bpPrimer
AY2642721Dinucleotide(TG)112265..86231  bpPrimer
AY7661381Mononucleotide(A)1111923..9331068  bpPrimer
KU5012671Dinucleotide(CA)132657..82251  bpPrimer
AY2642751Dinucleotide(GA)142837..64220  bpPrimer
AY2642752Dinucleotide(GA)71487..100220  bpPrimer
AY2642753Dinucleotide(AG)612147..158220  bpPrimer
AY2642754Dinucleotide(AG)612181..192220  bpPrimer
AY7661331Mononucleotide(A)1111922..9321067  bpPrimer
AY2642811Dinucleotide(TG)153039..6895  bpPrimer
AY2642781Dinucleotide(TG)122497..120166  bpPrimer
AY7661261Mononucleotide(A)1111922..9321067  bpPrimer
AY7661271Mononucleotide(A)1111923..9331068  bpPrimer
AY7661351Mononucleotide(A)1111922..9321067  bpPrimer
AY7661361Mononucleotide(A)1111922..9321067  bpPrimer
KU5012621Dinucleotide(AC)102046..65247  bpPrimer
 
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