Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Carcharhinus leucas [20]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KJ9161201Dinucleotide(TG)1224153..176359  bpPrimer
KJ9161081Dinucleotide(CA)816213..228348  bpPrimer
KJ9161082Dinucleotide(CA)612279..290348  bpPrimer
KJ9161083Dinucleotide(AC)612304..315348  bpPrimer
KJ9161191Dinucleotide(TC)1224237..260341  bpPrimer
KJ9161181Dinucleotide(GT)918201..218323  bpPrimer
KJ9161161Dinucleotide(AC)102062..81116  bpPrimer
KJ9161091Dinucleotide(AC)714151..164405  bpPrimer
KJ9161092Dinucleotide(AC)1122205..226405  bpPrimer
KJ9161211Dinucleotide(CA)1224264..287386  bpPrimer
KJ9161171Dinucleotide(GT)918127..144283  bpPrimer
KJ9161231Trinucleotide(AGG)92754..80241  bpPrimer
KJ9161131Dinucleotide(TC)918129..146255  bpPrimer
KJ9161151Dinucleotide(TC)91841..58212  bpPrimer
KJ9161061Dinucleotide(TC)71432..45214  bpPrimer
KJ9161141Dinucleotide(GA)102093..112278  bpPrimer
KJ9161221Trinucleotide(ACC)721107..127378  bpPrimer
KJ9161222Dinucleotide(CA)714218..231378  bpPrimer
KJ9161223Dinucleotide(TG)816244..259378  bpPrimer
KJ9161224Composite(TG)9(AG)630272..301378  bpPrimer
KJ9161225Dinucleotide(TG)612304..315378  bpPrimer
KJ9161226Dinucleotide(GT)816330..345378  bpPrimer
KJ9161227Dinucleotide(TG)1020358..377378  bpPrimer
KJ9161041Dinucleotide(AC)61282..93219  bpPrimer
KJ9161121Dinucleotide(AG)816165..180267  bpPrimer
KJ9161101Dinucleotide(CA)61295..106260  bpPrimer
KJ9161102Dinucleotide(AC)816189..204260  bpPrimer
KJ9161111Dinucleotide(AG)714158..171264  bpPrimer
KJ9161051Dinucleotide(AC)612103..114307  bpPrimer
KJ9161071Dinucleotide(GA)714264..277409  bpPrimer
 
Home  CABin home  Support &Feedback
Copyright© NBFGR (ICAR), All Rights Reserved.
Designed and developed by NABG team, NBFGR, Lucknow