Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Alopias vulpinus [8]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KJ4544421Tetranucleotide(GATA)1456125..180246  bpPrimer
KJ4544471Trinucleotide(GTT)721110..130181  bpPrimer
KJ4544461Trinucleotide(GAT)82462..85213  bpPrimer
KJ4544411Dinucleotide(GT)1530216..245297  bpPrimer
KJ4544451Trinucleotide(GAT)72193..113214  bpPrimer
AF4230671Dinucleotide(AC)2958451..508659  bpPrimer
KJ4544441Tetranucleotide(AGAT)2496140..235271  bpPrimer
KJ4544431Tetranucleotide(AGAT)72865..92262  bpPrimer
KJ4544432Composite(AGAT)11(AGAC)6(AGAT)588109..196262  bpPrimer
 
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