Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Aetobatus flagellum [8]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AB4699821Dinucleotide(GA)132660..85246  bpPrimer
AB4699801Dinucleotide(CA)714139..152179  bpPrimer
AB4699831Dinucleotide(AG)1122230..251266  bpPrimer
AB4699761Dinucleotide(CA)1020106..125256  bpPrimer
AB4699791Dinucleotide(CA)1428127..154238  bpPrimer
AB4699781Dinucleotide(CA)91820..37125  bpPrimer
AB4699811Dinucleotide(AC)71419..32134  bpPrimer
AB4699771Dinucleotide(AC)61251..62279  bpPrimer
AB4699772Dinucleotide(AC)2244113..156279  bpPrimer
AB4699773Dinucleotide(CA)918176..193279  bpPrimer
AB4699774Dinucleotide(AC)612267..278279  bpPrimer
 
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