Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Silonia silondia [11]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KT8864201Dinucleotide(AC)132660..85270  bpPrimer
KT8864221Dinucleotide(GT)61215..26418  bpPrimer
KT8864222Dinucleotide(GT)1224100..123418  bpPrimer
KT8864223Mononucleotide(T)1212375..386418  bpPrimer
KT8864224Mononucleotide(T)1313397..409418  bpPrimer
KT8864181Dinucleotide(TG)91835..52224  bpPrimer
KT8864182Dinucleotide(GT)1836134..169224  bpPrimer
KT8864241Dinucleotide(CA)91859..76337  bpPrimer
KT8864242Dinucleotide(CA)714117..130337  bpPrimer
KT8864231Dinucleotide(GT)1530299..328384  bpPrimer
KT8864232Dinucleotide(GT)612331..342384  bpPrimer
KT8864191Mononucleotide(A)121299..110599  bpPrimer
KT8864192Tetranucleotide(TAGA)520237..256599  bpPrimer
KT8864193Tetranucleotide(AGAT)1352258..309599  bpPrimer
KT8864161Dinucleotide(CA)2040199..238481  bpPrimer
KT8864141Dinucleotide(AC)918108..125501  bpPrimer
KT8864151Dinucleotide(TC)112223..44449  bpPrimer
KT8864152Dinucleotide(AC)173455..88449  bpPrimer
KT8864171Dinucleotide(AG)918283..300701  bpPrimer
 
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