Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Siganus canaliculatus [9]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KM2467411Dinucleotide(CT)8168..23406  bpPrimer
KM2467412Dinucleotide(CT)71442..55406  bpPrimer
KM2467413Dinucleotide(AG)612388..399406  bpPrimer
KM2467401Dinucleotide(CT)6128..19430  bpPrimer
KM2467402Trinucleotide(CTG)927188..214430  bpPrimer
KM2467403Mononucleotide(A)1010236..245430  bpPrimer
KM2467404Dinucleotide(AG)612412..423430  bpPrimer
KM2467391Dinucleotide(CT)7148..21729  bpPrimer
KM2467392Dinucleotide(CA)1836137..172729  bpPrimer
KM2467393Trinucleotide(TCC)618318..335729  bpPrimer
KM2467394Mononucleotide(A)2323490..512729  bpPrimer
KM2467395Dinucleotide(AG)612711..722729  bpPrimer
KM2467361Dinucleotide(CT)7148..21330  bpPrimer
KM2467362Dinucleotide(TG)918203..220330  bpPrimer
KM2467363Dinucleotide(AG)612312..323330  bpPrimer
KM2467381Composite(CT)7(CA)13408..47656  bpPrimer
KM2467382Dinucleotide(CA)1734207..240656  bpPrimer
KM2467383Dinucleotide(AG)1122628..649656  bpPrimer
KM2467421Dinucleotide(CT)6128..19606  bpPrimer
KM2467422Dinucleotide(CA)377470..143606  bpPrimer
KM2467423Dinucleotide(AG)612592..603606  bpPrimer
KM2467371Dinucleotide(CT)11228..29660  bpPrimer
KM2467372Dinucleotide(TG)1632423..454660  bpPrimer
KM2467373Composite(TG)13(AG)638614..651660  bpPrimer
KM2467431Dinucleotide(CT)7148..21326  bpPrimer
KM2467432Dinucleotide(AC)816145..160326  bpPrimer
KM2467433Dinucleotide(AG)612308..319326  bpPrimer
KM2467351Composite(CT)6(CA)13388..45654  bpPrimer
KM2467352Dinucleotide(CA)1938205..242654  bpPrimer
KM2467353Dinucleotide(AG)612636..647654  bpPrimer
 
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