Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Thunnus alalunga [43]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KM9777901Dinucleotide(AC)918317..334464  bpPrimer
KM9778201Dinucleotide(TG)173474..107218  bpPrimer
KM9777931Dinucleotide(TC)918185..202464  bpPrimer
KM9777961Trinucleotide(GGA)72120..40375  bpPrimer
KM9777962Dinucleotide(TG)112288..109375  bpPrimer
KM9778031Dinucleotide(TG)61215..26331  bpPrimer
KM9778032Dinucleotide(GT)122493..116331  bpPrimer
KM9778051Dinucleotide(AC)1326194..219351  bpPrimer
KM9778052Dinucleotide(CA)1122323..344351  bpPrimer
KM9778181Trinucleotide(GAT)1751190..240272  bpPrimer
KM9777871Dinucleotide(CA)1122208..229375  bpPrimer
KM9777881Dinucleotide(TG)91845..62386  bpPrimer
KM9777861Dinucleotide(CT)816135..150399  bpPrimer
KM9778001Dinucleotide(TG)122481..104225  bpPrimer
KM9778111Dinucleotide(AC)142847..74335  bpPrimer
KM9777981Dinucleotide(GA)1122226..247342  bpPrimer
KM9778011Dinucleotide(TC)122452..75184  bpPrimer
KM9777821Tetranucleotide(TAGA)1768147..214413  bpPrimer
KM9778131Dinucleotide(AC)163236..67134  bpPrimer
KM9777941Dinucleotide(AC)1020218..237345  bpPrimer
KM9777911Dinucleotide(TG)1122239..260313  bpPrimer
KM9778171Dinucleotide(TG)173468..101289  bpPrimer
KM9778172Dinucleotide(CA)3468220..287289  bpPrimer
KM9778121Trinucleotide(TGT)164839..86218  bpPrimer
KM9777951Dinucleotide(GT)1122100..121390  bpPrimer
KM9777991Dinucleotide(AC)1122143..164396  bpPrimer
KM9778091Dinucleotide(AC)1428180..207290  bpPrimer
KM9778161Dinucleotide(GA)81658..73360  bpPrimer
KM9778162Dinucleotide(TG)1632189..220360  bpPrimer
KM9777921Dinucleotide(AC)91851..68370  bpPrimer
KM9777971Dinucleotide(TC)1122211..232342  bpPrimer
KM9777841Tetranucleotide(TATC)1248293..340425  bpPrimer
KM9777831Tetranucleotide(GATA)1560126..185453  bpPrimer
KM9778221Dinucleotide(AC)1836171..206387  bpPrimer
KM9778061Dinucleotide(TG)1326123..148382  bpPrimer
KM9778062Dinucleotide(TG)4692290..381382  bpPrimer
KM9777891Dinucleotide(TG)1020390..409558  bpPrimer
KM9778211Dinucleotide(AC)1836153..188367  bpPrimer
KM9777811Tetranucleotide(GATA)176885..152318  bpPrimer
KM9777812Dinucleotide(AC)2754265..318318  bpPrimer
KM9778191Dinucleotide(AG)173494..127248  bpPrimer
KM9778041Dinucleotide(CA)1326167..192386  bpPrimer
KM9778071Trinucleotide(TTC)1442151..192454  bpPrimer
KM9778081Dinucleotide(CA)153068..97220  bpPrimer
KM9778082Dinucleotide(CT)918183..200220  bpPrimer
KM9778101Dinucleotide(TG)1428168..195338  bpPrimer
KM9778021Trinucleotide(TTC)1236128..163373  bpPrimer
KM9778151Dinucleotide(CA)1530147..176355  bpPrimer
KM9777851Tetranucleotide(TTCT)114448..91269  bpPrimer
KM9777852Tetranucleotide(AAAC)520213..232269  bpPrimer
KM9777853Dinucleotide(TC)612257..268269  bpPrimer
KM9777801Tetranucleotide(TATC)1768189..256399  bpPrimer
KM9778141Dinucleotide(AC)1530152..181311  bpPrimer
 
Home  CABin home  Support &Feedback
Copyright© NBFGR (ICAR), All Rights Reserved.
Designed and developed by NABG team, NBFGR, Lucknow