Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Centropyge bicolor [23]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
LN8702501Dinucleotide(AC)816401..416461  bpPrimer
LN8702441Dinucleotide(TG)816187..202400  bpPrimer
LN8702401Dinucleotide(GT)81639..54437  bpPrimer
LN8702431Dinucleotide(TG)816102..117423  bpPrimer
LN8702591Dinucleotide(GT)612125..136416  bpPrimer
LN8702592Dinucleotide(TC)918214..231416  bpPrimer
LN8702593Dinucleotide(AC)816380..395416  bpPrimer
LN8702381Dinucleotide(AC)81650..65416  bpPrimer
LN8702481Dinucleotide(AG)816220..235306  bpPrimer
LN8702391Dinucleotide(CA)816416..431468  bpPrimer
LN8702421Dinucleotide(TC)714248..261492  bpPrimer
LN8702422Dinucleotide(AC)816277..292492  bpPrimer
LN8702561Dinucleotide(CA)612144..155405  bpPrimer
LN8702562Dinucleotide(CA)1020168..187405  bpPrimer
LN8702461Dinucleotide(TG)918122..139341  bpPrimer
LN8702411Dinucleotide(CA)918248..265446  bpPrimer
LN8702412Dinucleotide(CA)612418..429446  bpPrimer
LN8702541Dinucleotide(GT)918177..194349  bpPrimer
LN8702542Dinucleotide(GA)816334..349349  bpPrimer
LN8702471Dinucleotide(AC)81670..85361  bpPrimer
LN8702472Dinucleotide(CA)918200..217361  bpPrimer
LN8702551Dinucleotide(AC)918185..202386  bpPrimer
LN8702511Dinucleotide(AC)816323..338451  bpPrimer
LN8702491Dinucleotide(AT)816162..177467  bpPrimer
LN8702371Dinucleotide(GT)816155..170320  bpPrimer
LN8702372Dinucleotide(CA)612265..276320  bpPrimer
LN8702451Dinucleotide(GT)816109..124296  bpPrimer
LN8702452Dinucleotide(AC)2244253..296296  bpPrimer
LN8702571Dinucleotide(TC)102083..102391  bpPrimer
LN8702531Dinucleotide(CA)81680..95418  bpPrimer
LN8702521Dinucleotide(AC)81665..80349  bpPrimer
LN8702522Dinucleotide(AC)1428293..320349  bpPrimer
LN8702581Dinucleotide(AG)918307..324375  bpPrimer
 
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