Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Schistura sikmaiensis [71]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KJ5459491Dinucleotide(AC)9187..2496  bpPrimer
KJ5459461Dinucleotide(CA)112265..86179  bpPrimer
KJ5459481Dinucleotide(CT)61212..23165  bpPrimer
KJ5459421Dinucleotide(TG)81616..31451  bpPrimer
KJ5459422Dinucleotide(GT)612117..128451  bpPrimer
KJ5459321Tetranucleotide(GACA)520104..123158  bpPrimer
KJ5459241Tetranucleotide(AGAC)52048..67448  bpPrimer
KJ5459242Dinucleotide(AC)612170..181448  bpPrimer
KJ5459571Dinucleotide(CA)132644..69160  bpPrimer
KJ5459572Composite(CA)7(AC)72871..98160  bpPrimer
KJ5459573Dinucleotide(AC)714113..126160  bpPrimer
KJ5459331Dinucleotide(TG)714126..139148  bpPrimer
KJ5459251Dinucleotide(CT)71496..109241  bpPrimer
KJ5459252Dinucleotide(GT)714135..148241  bpPrimer
KJ5459411Dinucleotide(AC)142894..121262  bpPrimer
KJ5459412Dinucleotide(TG)612250..261262  bpPrimer
KJ5459231Dinucleotide(CA)91882..99231  bpPrimer
KJ5459581Dinucleotide(AC)61219..30123  bpPrimer
KJ5459582Composite(GTGC)5(GT)63287..118123  bpPrimer
KJ5459441Composite(GTGC)5(GT)1448132..179272  bpPrimer
KJ5459541Tetranucleotide(CACG)9367..42115  bpPrimer
KJ5459542Dinucleotide(CA)193847..84115  bpPrimer
KJ5459291Dinucleotide(GT)61284..95196  bpPrimer
KJ5459391Dinucleotide(CA)612123..134178  bpPrimer
KJ5459401Trinucleotide(AAC)61836..53186  bpPrimer
KJ5459402Trinucleotide(CAA)113359..91186  bpPrimer
KJ5459551Dinucleotide(CT)224413..56157  bpPrimer
KJ5459552Dinucleotide(TC)81658..73157  bpPrimer
KJ5459511Dinucleotide(CA)346814..81314  bpPrimer
KJ5459561Pentanucleotide(TGGTG)525148..172218  bpPrimer
KJ5459521Dinucleotide(CA)12241..24145  bpPrimer
KJ5459522Tetranucleotide(CGCA)62427..50145  bpPrimer
KJ5459381Tetranucleotide(TCTG)93638..73143  bpPrimer
KJ5459431Tetranucleotide(TGTC)52060..79331  bpPrimer
KJ5459531Dinucleotide(GT)816101..116145  bpPrimer
KJ5459271Dinucleotide(CA)81694..109391  bpPrimer
KJ5459471Dinucleotide(GT)91872..89103  bpPrimer
KJ5459351Dinucleotide(AC)71484..97200  bpPrimer
KJ5459371Dinucleotide(GT)61286..97167  bpPrimer
KJ5459501Dinucleotide(AC)612182..193293  bpPrimer
KJ5459341Dinucleotide(TC)918354..371534  bpPrimer
KJ5459361Dinucleotide(CA)71417..30213  bpPrimer
KJ5459362Dinucleotide(AC)193865..102213  bpPrimer
KJ5459363Dinucleotide(AC)714105..118213  bpPrimer
KJ5459364Dinucleotide(CA)612122..133213  bpPrimer
KJ5459365Dinucleotide(CA)1530164..193213  bpPrimer
KX0682161Dinucleotide(GA)27541455..15082105  bpPrimer
KX0682141Trinucleotide(CAT)2163108..1701784  bpPrimer
KX0682131Dinucleotide(CT)33661362..14273133  bpPrimer
KX0682132Dinucleotide(AC)12241542..15653133  bpPrimer
KX0682133Dinucleotide(CA)9182046..20633133  bpPrimer
KX0682134Mononucleotide(A)17173117..31333133  bpPrimer
KX0682171Dinucleotide(CA)30603041..31004883  bpPrimer
KX0682172Mononucleotide(T)10104479..44884883  bpPrimer
KX0682101Trinucleotide(TGA)2472487..558685  bpPrimer
KX0682091Dinucleotide(GT)3060859..9181436  bpPrimer
KX0682121Dinucleotide(AC)3264799..8621797  bpPrimer
KX0682111Trinucleotide(TCA)24721823..18942607  bpPrimer
KX0682151Dinucleotide(GA)3060304..3631213  bpPrimer
KX0682181Dinucleotide(TC)2958848..9051485  bpPrimer
MK9202631Dinucleotide(CT)71496..109273  bpPrimer
MK9202632Composite(CA)6(GA)624162..185273  bpPrimer
MK9202671Dinucleotide(CA)102085..104264  bpPrimer
MK9202672Dinucleotide(CA)612107..118264  bpPrimer
MK9202673Tetranucleotide(CGCA)936121..156264  bpPrimer
MK8834951Tetranucleotide(TAGA)1664218..281499  bpPrimer
MK8834961Tetranucleotide(AAAG)1664218..281499  bpPrimer
MK8835011Trinucleotide(CAT)2060200..259433  bpPrimer
MK8834971Tetranucleotide(TGGT)1872200..271471  bpPrimer
MK8834991Tetranucleotide(TTGG)2184200..283396  bpPrimer
MK9202681Dinucleotide(GA)61285..96240  bpPrimer
MK9202682Trinucleotide(GCA)515141..155240  bpPrimer
MK9202641Dinucleotide(AC)714103..116277  bpPrimer
MK9202642Dinucleotide(AC)612180..191277  bpPrimer
MK8835001Trinucleotide(TTC)2163167..229429  bpPrimer
MK9202691Dinucleotide(CA)61283..94248  bpPrimer
MK9202692Dinucleotide(CT)714140..153248  bpPrimer
MK8834981Tetranucleotide(TCTA)2080200..279479  bpPrimer
MK9202651Dinucleotide(GT)612121..132284  bpPrimer
MK9202652Dinucleotide(TG)918189..206284  bpPrimer
MK9202661Dinucleotide(AG)61298..109275  bpPrimer
MK9202662Dinucleotide(GA)612169..180275  bpPrimer
KJ5459331Dinucleotide(TG)714126..139148  bpPrimer
KJ5459411Dinucleotide(AC)142894..121262  bpPrimer
KJ5459412Dinucleotide(TG)612250..261262  bpPrimer
KJ5459241Tetranucleotide(AGAC)52048..67448  bpPrimer
KJ5459242Dinucleotide(AC)612170..181448  bpPrimer
KJ5459581Dinucleotide(AC)61219..30123  bpPrimer
KJ5459582Composite(GTGC)5(GT)63287..118123  bpPrimer
KJ5459251Dinucleotide(CT)71496..109241  bpPrimer
KJ5459252Dinucleotide(GT)714135..148241  bpPrimer
KJ5459441Composite(GTGC)5(GT)1448132..179272  bpPrimer
KJ5459571Dinucleotide(CA)132644..69160  bpPrimer
KJ5459572Composite(CA)7(AC)72871..98160  bpPrimer
KJ5459573Dinucleotide(AC)714113..126160  bpPrimer
KJ5459511Dinucleotide(CA)346814..81314  bpPrimer
KJ5459401Trinucleotide(AAC)61836..53186  bpPrimer
KJ5459402Trinucleotide(CAA)113359..91186  bpPrimer
KJ5459361Dinucleotide(CA)71417..30213  bpPrimer
KJ5459362Dinucleotide(AC)193865..102213  bpPrimer
KJ5459363Dinucleotide(AC)714105..118213  bpPrimer
KJ5459364Dinucleotide(CA)612122..133213  bpPrimer
KJ5459365Dinucleotide(CA)1530164..193213  bpPrimer
 
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