Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Salmo trutta [79]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
FJ8214491Mononucleotide(T)1313562..5741002  bpPrimer
U602271Dinucleotide(GT)1632191..222400  bpPrimer
U602301Dinucleotide(CA)204032..71196  bpPrimer
U602302Dinucleotide(AC)408073..152196  bpPrimer
U602303Dinucleotide(CA)1734162..195196  bpPrimer
L494291Dinucleotide(TC)306069..128150  bpPrimer
U602241Dinucleotide(GT)163263..94188  bpPrimer
AB0010711Dinucleotide(AG)1224124..147195  bpPrimer
U602201Dinucleotide(AC)4488177..264283  bpPrimer
AF1297761Dinucleotide(AC)612428..439753  bpPrimer
AF1297762Dinucleotide(CA)612459..470753  bpPrimer
AB0010571Dinucleotide(GT)132630..5597  bpPrimer
FJ8214501Mononucleotide(T)1313562..5741001  bpPrimer
U602261Dinucleotide(AC)183666..101256  bpPrimer
U602262Dinucleotide(AC)1938110..147256  bpPrimer
U602263Dinucleotide(CA)714176..189256  bpPrimer
FJ8214511Mononucleotide(T)1313562..5741001  bpPrimer
AF0050741Dinucleotide(GT)142837..64126  bpPrimer
AB0010581Dinucleotide(TC)1326123..148247  bpPrimer
AB0010631Dinucleotide(TG)122431..54252  bpPrimer
AF1365331Dinucleotide(AG)112225..46309  bpPrimer
AF1365332Dinucleotide(AG)71455..68309  bpPrimer
AF1365333Dinucleotide(GA)61282..93309  bpPrimer
AF1365334Dinucleotide(GA)1224106..129309  bpPrimer
AF1365335c*(AG)10(G)12*31260..290309  bpPrimer
AB0010561Dinucleotide(TG)132645..70144  bpPrimer
AF1365311Dinucleotide(TG)71471..84298  bpPrimer
AF1365312Dinucleotide(TG)62124135..258298  bpPrimer
AF1365341Dinucleotide(AG)112223..44323  bpPrimer
AF1365342Dinucleotide(AG)71453..66323  bpPrimer
AF1365343Dinucleotide(GA)61281..92323  bpPrimer
AF1365344Dinucleotide(GA)2142105..146323  bpPrimer
AF1365345c*(AG)9(G)11*28277..304323  bpPrimer
U602221Dinucleotide(AC)265248..99253  bpPrimer
U602251Dinucleotide(GT)397886..163331  bpPrimer
U602252Dinucleotide(TG)612192..203331  bpPrimer
AB0010621Dinucleotide(CT)1326187..212339  bpPrimer
AB0010651Dinucleotide(GA)714121..134175  bpPrimer
AB0010601Dinucleotide(GT)61253..64166  bpPrimer
DQ2860281Dinucleotide(CA)71452..65110  bpPrimer
DQ2860331Dinucleotide(AC)71467..80183  bpPrimer
AB0010611Dinucleotide(CT)61291..102155  bpPrimer
U602231Dinucleotide(AC)3672137..208287  bpPrimer
AF1365351Dinucleotide(TC)1122152..173372  bpPrimer
AF1365352Dinucleotide(AC)2448258..305372  bpPrimer
AB0010591Dinucleotide(GA)224446..89268  bpPrimer
AB0010661Dinucleotide(AG)112235..56323  bpPrimer
AB0010662Dinucleotide(AG)71465..78323  bpPrimer
AB0010663Dinucleotide(GA)61292..103323  bpPrimer
AB0010664Dinucleotide(GA)1122116..137323  bpPrimer
AB0010665Dinucleotide(AG)1224250..273323  bpPrimer
AB0010641Dinucleotide(AG)112237..58170  bpPrimer
AB0010642Dinucleotide(AG)71467..80170  bpPrimer
AB0010643Dinucleotide(GA)61294..105170  bpPrimer
AB0010644Dinucleotide(GA)1122118..139170  bpPrimer
U602191Dinucleotide(CA)173419..52170  bpPrimer
DQ2860321Dinucleotide(CA)81643..58182  bpPrimer
DQ2860322Dinucleotide(TC)612143..154182  bpPrimer
U602281Dinucleotide(GA)132695..120156  bpPrimer
U602282Dinucleotide(AG)714124..137156  bpPrimer
U602211Dinucleotide(AC)489634..129246  bpPrimer
AF1365321Dinucleotide(TG)91871..88210  bpPrimer
AF1365322Dinucleotide(TG)714137..150210  bpPrimer
AF1365323Dinucleotide(TG)918153..170210  bpPrimer
FJ8214521Mononucleotide(T)1313562..5741001  bpPrimer
AB0010681Dinucleotide(TG)122429..52214  bpPrimer
FJ8214481Mononucleotide(T)1313562..5741002  bpPrimer
AF1297771Dinucleotide(AC)1224432..455769  bpPrimer
AB0010691Dinucleotide(CA)71491..104197  bpPrimer
AB0010692Dinucleotide(AC)816106..121197  bpPrimer
U602291Dinucleotide(TG)1734159..192486  bpPrimer
AF1365361Dinucleotide(TC)3162149..210417  bpPrimer
AF1365362Dinucleotide(AC)2856295..350417  bpPrimer
AB0010721Dinucleotide(TG)71471..84119  bpPrimer
AB0010571Dinucleotide(GT)132630..5597  bpPrimer
 
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