Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Euchiloglanis kishinouyei [24]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KC9870431Tetranucleotide(GAAT)624189..212318  bpPrimer
KC9870511Tetranucleotide(TCCA)832286..317431  bpPrimer
KC9870521Trinucleotide(ATT)14421..42369  bpPrimer
KC9870522Composite(CCAT)5(CTAT)27128122..249369  bpPrimer
KC9870523Dinucleotide(AC)1530339..368369  bpPrimer
KC9870471Trinucleotide(TAA)2266143..208445  bpPrimer
KC9870472Dinucleotide(CT)714431..444445  bpPrimer
KC9870411Tetranucleotide(ACGT)1144136..179468  bpPrimer
KC9870412c*(AC)29(ACT)5*71327..397468  bpPrimer
KC9870413Trinucleotide(TAC)515402..416468  bpPrimer
KC9870414Dinucleotide(TG)816428..443468  bpPrimer
KC9870421Tetranucleotide(GACC)93688..123410  bpPrimer
KC9870451Tetranucleotide(ACTG)72849..76616  bpPrimer
KC9870531Trinucleotide(TTA)824276..299417  bpPrimer
KC9870532Trinucleotide(TTA)515308..322417  bpPrimer
KC9870491Tetranucleotide(ATAG)1560143..202534  bpPrimer
KC9870541Tetranucleotide(TCCA)832286..317395  bpPrimer
KC9870391Trinucleotide(GCA)1545202..246577  bpPrimer
KC9870501Tetranucleotide(CCAT)832301..332643  bpPrimer
KC9870401Tetranucleotide(TAGA)1768132..199412  bpPrimer
KC9870461Trinucleotide(TAA)1133201..233395  bpPrimer
KC9870462Trinucleotide(TAC)515371..385395  bpPrimer
KC9870481Trinucleotide(AAG)721156..176390  bpPrimer
KC9870441Tetranucleotide(AATA)1040103..142253  bpPrimer
KY4269451Dinucleotide(TG)1122152..173356  bpPrimer
KY4269401Dinucleotide(AC)1326151..176353  bpPrimer
KY4269441Dinucleotide(GT)61251..62587  bpPrimer
KY4269442Dinucleotide(GT)81684..99587  bpPrimer
KY4269443Dinucleotide(GT)1122252..273587  bpPrimer
KY4269421Dinucleotide(AC)1326195..220526  bpPrimer
KY4269431Dinucleotide(TG)1122133..154345  bpPrimer
KY4269391Dinucleotide(AC)1326211..236520  bpPrimer
KY4269392Dinucleotide(CA)612347..358520  bpPrimer
KY4269393Dinucleotide(CA)3366454..519520  bpPrimer
KY4269461Dinucleotide(GT)1326165..190739  bpPrimer
KY4269411Dinucleotide(CA)1326401..426562  bpPrimer
 
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