Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Istiompax indica [18]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KJ5730931Trinucleotide(TAT)1648200..247392  bpPrimer
KJ5730851Trinucleotide(GGA)927166..192468  bpPrimer
KJ5730941Tetranucleotide(AAAC)1144313..356512  bpPrimer
KJ5730881Trinucleotide(ACA)144258..99339  bpPrimer
KJ5730921Trinucleotide(CAG)226676..141193  bpPrimer
KJ5730971Tetranucleotide(CAGT)135285..136301  bpPrimer
KJ5730831Trinucleotide(GAG)103068..97160  bpPrimer
KJ5730891Trinucleotide(TTG)144240..81338  bpPrimer
KJ5730951Trinucleotide(GTG)927281..307432  bpPrimer
KJ5730871Trinucleotide(AGG)92752..78119  bpPrimer
KJ5730911Trinucleotide(TGT)1133152..184363  bpPrimer
KJ5730841Trinucleotide(ATT)164895..142292  bpPrimer
KJ5730901Trinucleotide(CTG)113361..93417  bpPrimer
KJ5730961Trinucleotide(ATA)92760..86444  bpPrimer
KJ5730991Trinucleotide(CCG)927132..158364  bpPrimer
KJ5730981Tetranucleotide(GACA)104093..132362  bpPrimer
KJ5730821Trinucleotide(GCG)1030109..138342  bpPrimer
KJ5730861Trinucleotide(TTC)1236134..169395  bpPrimer
 
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