Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Zebrasoma flavescens [23]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
EU7944721Tetranucleotide(ATCT)832308..339439  bpPrimer
EU7944711Composite(ATCT)8(GTCT)18(ATCT)10144161..304593  bpPrimer
EU7944791Tetranucleotide(TCAG)624175..198589  bpPrimer
EU7944701Tetranucleotide(TATC)1976126..201337  bpPrimer
EU7944871Dinucleotide(CT)193873..110250  bpPrimer
EU7944761Dinucleotide(GT)918147..164584  bpPrimer
EU7944762Tetranucleotide(TATC)832343..374584  bpPrimer
EU7944831Tetranucleotide(TATG)832207..238523  bpPrimer
EU7944891Dinucleotide(CA)1428486..513690  bpPrimer
EU7944901Tetranucleotide(ATGG)83294..125659  bpPrimer
EU7944861Tetranucleotide(TATG)1872332..403482  bpPrimer
EU7944851Tetranucleotide(ATAC)1144305..348596  bpPrimer
EU7944731Tetranucleotide(ATCT)1872202..273472  bpPrimer
EU7944771Tetranucleotide(AGAT)1664116..179419  bpPrimer
EU7944801Tetranucleotide(TGAC)93659..94488  bpPrimer
EU7944802Dinucleotide(AC)714208..221488  bpPrimer
EU7944841Tetranucleotide(ATGT)83254..85712  bpPrimer
EU7944811Tetranucleotide(GTCA)72878..105391  bpPrimer
EU7944751Tetranucleotide(AGAC)832106..137403  bpPrimer
EU7944752Composite(CAGA)7(TAGA)1276141..216403  bpPrimer
EU7944911Dinucleotide(TG)816100..115288  bpPrimer
EU7944691Tetranucleotide(TAGA)1872268..339427  bpPrimer
EU7944821Dinucleotide(TG)61285..96590  bpPrimer
EU7944822Dinucleotide(CA)816128..143590  bpPrimer
EU7944823Tetranucleotide(ACTG)32128225..352590  bpPrimer
EU7944741Tetranucleotide(CTAT)936273..308478  bpPrimer
EU7944781Tetranucleotide(ACTG)1560151..210512  bpPrimer
EU7944881Dinucleotide(CT)132663..88351  bpPrimer
EU7944882Trinucleotide(GAG)824277..300351  bpPrimer
 
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