Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Xiphophorus hellerii [21]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AY2042241Mononucleotide(T)1212170..181550  bpPrimer
AY2042242Dinucleotide(CA)612219..230550  bpPrimer
AY2660121Dinucleotide(TG)61237..48511  bpPrimer
AY2660161Tetranucleotide(TGTC)1976269..344427  bpPrimer
AY2660071Dinucleotide(TG)612256..267734  bpPrimer
AY2660072Dinucleotide(TG)816318..333734  bpPrimer
AY2660031Dinucleotide(CA)714279..292562  bpPrimer
AY2660032Mononucleotide(T)1010463..472562  bpPrimer
AY2660081Trinucleotide(CAG)515160..174688  bpPrimer
AY2042231Tetranucleotide(AAAC)1040512..5511023  bpPrimer
AY2042211Dinucleotide(TA)816208..223550  bpPrimer
AY2042212Dinucleotide(AT)816225..240550  bpPrimer
AY2660091Trinucleotide(TGC)618111..128676  bpPrimer
AY2660061Tetranucleotide(ATAG)1872124..195599  bpPrimer
AY2660151Dinucleotide(CA)714279..292562  bpPrimer
AY2660152Mononucleotide(T)1010463..472562  bpPrimer
AY2660051Dinucleotide(CT)714258..2711026  bpPrimer
AY2660052Mononucleotide(A)1414506..5191026  bpPrimer
AY2660053Tetranucleotide(CTAT)1872757..8281026  bpPrimer
AY2660131Dinucleotide(GT)91878..95748  bpPrimer
AY2660041Dinucleotide(AC)1122115..136658  bpPrimer
AY2042221Dinucleotide(CT)714107..120517  bpPrimer
KF0023821Dinucleotide(TG)102021..4064  bpPrimer
AY2660141Dinucleotide(AC)81692..107497  bpPrimer
 
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