Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Xiphias gladius [63]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AF5458361Dinucleotide(AC)1632232..263344  bpPrimer
FJ5348101Dinucleotide(TG)112227..48434  bpPrimer
FJ5348102Dinucleotide(TG)81651..66434  bpPrimer
FJ5348103Dinucleotide(GT)346894..161434  bpPrimer
FJ5348241Trinucleotide(CCT)721280..300737  bpPrimer
FJ5348242Mononucleotide(T)1010665..674737  bpPrimer
AF5458441Trinucleotide(TCC)51585..99289  bpPrimer
AF5458381Dinucleotide(AC)1122110..131338  bpPrimer
FJ9662131Tetranucleotide(CTAT)187262..133410  bpPrimer
FJ5348501Dinucleotide(GT)1122120..141190  bpPrimer
AF5458421Trinucleotide(ATG)113356..88285  bpPrimer
FJ5348181Dinucleotide(CA)1326532..557963  bpPrimer
FJ5348351Dinucleotide(TC)714157..170522  bpPrimer
FJ5348481Dinucleotide(CA)612371..382467  bpPrimer
FJ5348482Dinucleotide(AC)816384..399467  bpPrimer
FJ5348483Dinucleotide(AC)714408..421467  bpPrimer
FJ5348121Dinucleotide(CA)163279..110466  bpPrimer
FJ5348341Trinucleotide(AGG)824384..407756  bpPrimer
FJ5348201Trinucleotide(GAT)515159..173387  bpPrimer
FJ5348202Mononucleotide(A)1616277..292387  bpPrimer
FJ5348371Dinucleotide(AG)714209..222343  bpPrimer
FJ5348441Trinucleotide(GGA)72166..86166  bpPrimer
FJ5348331Dinucleotide(TA)61231..42518  bpPrimer
FJ5348261Dinucleotide(GA)1020252..271543  bpPrimer
FJ5348031Dinucleotide(TG)1224207..230343  bpPrimer
FJ5348071Mononucleotide(C)111187..97351  bpPrimer
FJ5348072Trinucleotide(CCA)515124..138351  bpPrimer
FJ5348073Dinucleotide(GT)1020282..301351  bpPrimer
FJ5348471Trinucleotide(TCC)82428..51204  bpPrimer
FJ5348472Mononucleotide(A)1010175..184204  bpPrimer
FJ5348091Dinucleotide(CA)408090..169465  bpPrimer
FJ5348301Trinucleotide(AGG)515118..132220  bpPrimer
FJ5348271Trinucleotide(AGG)824119..142182  bpPrimer
AF5458431Trinucleotide(TCC)92760..86246  bpPrimer
FJ5348161Trinucleotide(CAT)618194..211548  bpPrimer
FJ5348162Trinucleotide(TCG)721238..258548  bpPrimer
FJ5348163Dinucleotide(GT)1326516..541548  bpPrimer
FJ5348111Dinucleotide(AC)918231..248390  bpPrimer
FJ5348171Trinucleotide(TCC)51526..40734  bpPrimer
FJ5348172Trinucleotide(TCC)82477..100734  bpPrimer
FJ5348173Mononucleotide(T)1111214..224734  bpPrimer
FJ5348174Dinucleotide(AG)714704..717734  bpPrimer
FJ5348521Trinucleotide(GGA)721577..597734  bpPrimer
AF5458391Dinucleotide(AC)4488103..190436  bpPrimer
FJ5348461Dinucleotide(CT)714118..131303  bpPrimer
FJ5348462Dinucleotide(CT)1632183..214303  bpPrimer
FJ5348431Dinucleotide(AC)71482..95374  bpPrimer
FJ5348432Dinucleotide(GA)612264..275374  bpPrimer
FJ5348433Dinucleotide(GA)612280..291374  bpPrimer
FJ5348434Dinucleotide(GA)816294..309374  bpPrimer
FJ5348291Dinucleotide(TG)714327..340804  bpPrimer
FJ5348292Trinucleotide(GGA)824462..485804  bpPrimer
FJ5348131Dinucleotide(AC)91866..83341  bpPrimer
FJ5348132Dinucleotide(CA)112291..112341  bpPrimer
FJ5348133Dinucleotide(AC)3060116..175341  bpPrimer
FJ5348421Dinucleotide(AC)1938116..153466  bpPrimer
FJ5348451Dinucleotide(CT)816218..233377  bpPrimer
FJ5348452Trinucleotide(GGA)515360..374377  bpPrimer
FJ5348511Trinucleotide(GAG)721203..223394  bpPrimer
FJ5348512Trinucleotide(GAG)721251..271394  bpPrimer
FJ5348081Dinucleotide(AC)112218..39327  bpPrimer
FJ5348082Dinucleotide(AC)132642..67327  bpPrimer
FJ5348083Composite(GT)6(AG)624183..206327  bpPrimer
FJ5348084Dinucleotide(GA)612224..235327  bpPrimer
FJ5348491Dinucleotide(AC)612141..152504  bpPrimer
FJ5348381Trinucleotide(AGG)824158..181317  bpPrimer
FJ5348382Trinucleotide(AGG)515187..201317  bpPrimer
FJ5348383Trinucleotide(AGG)515224..238317  bpPrimer
FJ5348281Dinucleotide(GT)61246..57630  bpPrimer
FJ5348282Dinucleotide(GT)61268..79630  bpPrimer
FJ5348283Trinucleotide(GAG)721194..214630  bpPrimer
FJ5348284Trinucleotide(GAG)618356..373630  bpPrimer
AF5458351Dinucleotide(TG)3570186..255296  bpPrimer
FJ5348061Dinucleotide(TC)2040104..143536  bpPrimer
FJ5348062Dinucleotide(GT)2142151..192536  bpPrimer
FJ5348311Trinucleotide(ACA)1030165..194564  bpPrimer
AF5458451Trinucleotide(TCC)515100..114254  bpPrimer
AF5458401Trinucleotide(AGG)721173..193332  bpPrimer
FJ5348051Dinucleotide(AC)1734283..316457  bpPrimer
AF5458371Composite(AT)6(GT)164423..66283  bpPrimer
AF5458372Mononucleotide(T)1010116..125283  bpPrimer
AF5458373Mononucleotide(A)1111235..245283  bpPrimer
FJ5348141Dinucleotide(AC)81696..111220  bpPrimer
FJ5348191Trinucleotide(AGG)927353..379509  bpPrimer
FJ5348231Trinucleotide(GAG)721171..191357  bpPrimer
FJ5348411Trinucleotide(TCC)51526..40455  bpPrimer
FJ5348412Trinucleotide(ATC)82446..69455  bpPrimer
FJ5348041Dinucleotide(CA)91887..104386  bpPrimer
AF5458411Trinucleotide(AAC)721113..133282  bpPrimer
FJ5348251Trinucleotide(GGA)82499..122222  bpPrimer
FJ5348221Composite(CT)7(CA)1340407..446822  bpPrimer
FJ5348222Dinucleotide(AG)1326458..483822  bpPrimer
FJ5348223Dinucleotide(TC)1632596..627822  bpPrimer
FJ5348211Dinucleotide(AG)112296..117760  bpPrimer
FJ5348212Trinucleotide(GAG)927133..159760  bpPrimer
FJ5348213Trinucleotide(GGA)618253..270760  bpPrimer
FJ5348214Dinucleotide(CA)1836592..627760  bpPrimer
FJ5348215Hexanucleotide(ATCAGG)530686..715760  bpPrimer
FJ5348151Trinucleotide(AGG)618224..241566  bpPrimer
FJ5348021Mononucleotide(C)1010249..258969  bpPrimer
FJ5348022Dinucleotide(GT)1632480..511969  bpPrimer
FJ5348023c*(GT)12(GTGTGG)6*56514..569969  bpPrimer
FJ5348401Mononucleotide(A)131344..56877  bpPrimer
FJ5348402Trinucleotide(GAG)515422..436877  bpPrimer
FJ5348361Trinucleotide(CCT)618165..182371  bpPrimer
 
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