Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Wallago attu [60]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
JX9711141Dinucleotide(CA)2856334..389404  bpPrimer
JX9710911Dinucleotide(AC)1122147..168169  bpPrimer
JX9710771Dinucleotide(CA)1836117..152168  bpPrimer
JX9711061Dinucleotide(AC)1734125..158175  bpPrimer
JX9711121Dinucleotide(CA)1632186..217389  bpPrimer
JX9710921Dinucleotide(GT)14281..28158  bpPrimer
JX9710922Dinucleotide(TG)91895..112158  bpPrimer
JX9711031Dinucleotide(AC)2244491..534556  bpPrimer
JX9711032Mononucleotide(T)1111536..546556  bpPrimer
JX9710651Dinucleotide(TC)918342..359535  bpPrimer
JX9710652Dinucleotide(TC)714368..381535  bpPrimer
JX9710653Dinucleotide(TC)714399..412535  bpPrimer
JX9710654Dinucleotide(TC)1938421..458535  bpPrimer
JX9710991Dinucleotide(TG)612481..492676  bpPrimer
JX9710992Dinucleotide(GT)1122512..533676  bpPrimer
JX9711051Dinucleotide(CA)2040173..212227  bpPrimer
JX9711151Dinucleotide(GT)6121..12205  bpPrimer
JX9711152Dinucleotide(TG)224422..65205  bpPrimer
JX9711153Tetranucleotide(ATTT)520147..166205  bpPrimer
JX9710751Tetranucleotide(ATAG)520397..416866  bpPrimer
JX9710752Tetranucleotide(TAGA)1768418..485866  bpPrimer
JX9710691Dinucleotide(AG)1530230..259536  bpPrimer
JX9710951Dinucleotide(CA)1836134..169169  bpPrimer
JX9711041Dinucleotide(TG)61212..23357  bpPrimer
JX9711042Dinucleotide(TG)2856241..296357  bpPrimer
JX9710641Dinucleotide(GA)612150..161316  bpPrimer
JX9710821Dinucleotide(AC)1938272..309426  bpPrimer
JX9710822Dinucleotide(AC)1836341..376426  bpPrimer
JX9710791Dinucleotide(AC)2142342..383632  bpPrimer
JX9710861Dinucleotide(AC)714105..118296  bpPrimer
JX9710862Dinucleotide(TG)2652231..282296  bpPrimer
JX9710811Dinucleotide(CA)2040152..191565  bpPrimer
JX9710631Dinucleotide(GT)714108..121818  bpPrimer
JX9710632Trinucleotide(TGC)1030310..339818  bpPrimer
JX9710671Dinucleotide(TG)91851..6886  bpPrimer
JX9710851Dinucleotide(CA)2754110..163493  bpPrimer
JX9711091Dinucleotide(GT)15301..30161  bpPrimer
JX9711021Dinucleotide(GT)2244113..156156  bpPrimer
JX9711011Dinucleotide(CA)31621..62268  bpPrimer
JX9711012Dinucleotide(GA)714251..264268  bpPrimer
JX9710591Tetranucleotide(ATCC)62433..56346  bpPrimer
JX9710592Tetranucleotide(CATC)728293..320346  bpPrimer
JX9710611Dinucleotide(AC)1938228..265266  bpPrimer
JX9710701Dinucleotide(TG)1734120..153247  bpPrimer
JX9710741Tetranucleotide(ATCT)1768653..720805  bpPrimer
JX9711101Mononucleotide(T)101091..100377  bpPrimer
JX9711102Dinucleotide(GT)1734331..364377  bpPrimer
JX9711071Dinucleotide(AC)1632200..231232  bpPrimer
JX9710621Dinucleotide(AC)71488..101549  bpPrimer
JX9710622Trinucleotide(GAA)721527..547549  bpPrimer
JX9711001Dinucleotide(TG)1734250..283284  bpPrimer
JX9711131Dinucleotide(TG)816493..508660  bpPrimer
JX9710781Tetranucleotide(TATC)832388..419757  bpPrimer
JX9710782Tetranucleotide(TCTA)1040422..461757  bpPrimer
JX9710783Tetranucleotide(TCTA)832481..512757  bpPrimer
JX9710784Tetranucleotide(TCTA)1976532..607757  bpPrimer
JX9710785Tetranucleotide(ATCT)1664618..681757  bpPrimer
JX9710786Tetranucleotide(ATCT)1040697..736757  bpPrimer
JX9710931Dinucleotide(GT)316248..109109  bpPrimer
JX9710941Dinucleotide(TG)91841..58181  bpPrimer
JX9710981Dinucleotide(AC)21428..4992  bpPrimer
JX9710761Dinucleotide(TG)71470..83390  bpPrimer
JX9710762Dinucleotide(GT)71487..100390  bpPrimer
JX9710763Tetranucleotide(AATA)1352139..190390  bpPrimer
JX9710764Pentanucleotide(TGGAG)1260239..298390  bpPrimer
JX9710871Dinucleotide(CA)3060102..161161  bpPrimer
JX9711081Dinucleotide(GT)15301..30227  bpPrimer
JX9710571Dinucleotide(GT)1632333..364379  bpPrimer
JX9710601Dinucleotide(CA)7141..14458  bpPrimer
JX9710602Dinucleotide(AG)1122215..236458  bpPrimer
JX9710561Dinucleotide(GA)15301..30331  bpPrimer
JX9710901Dinucleotide(TG)1938187..224259  bpPrimer
JX9710971Dinucleotide(CA)1734207..240294  bpPrimer
JX9710711Dinucleotide(TG)1020154..173377  bpPrimer
JX9710712Dinucleotide(GT)1020253..272377  bpPrimer
JX9710581Tetranucleotide(ATCT)62454..77326  bpPrimer
JX9710961Dinucleotide(GT)1224287..310311  bpPrimer
JX9711111Dinucleotide(GT)15301..30237  bpPrimer
JX9710881Dinucleotide(GT)2244150..193193  bpPrimer
JX9710681Dinucleotide(TG)1224152..175592  bpPrimer
JX9710682Dinucleotide(GT)1632177..208592  bpPrimer
JX9710831Dinucleotide(AC)1428269..296297  bpPrimer
JX9710801Dinucleotide(TG)112215..36154  bpPrimer
JX9710802Dinucleotide(TG)224458..101154  bpPrimer
JX9710841Dinucleotide(CA)2448314..361500  bpPrimer
JX9710661Composite(AC)16(CA)105261..112128  bpPrimer
JX9710891Dinucleotide(GT)1938174..211323  bpPrimer
JX9710892Dinucleotide(TG)2040239..278323  bpPrimer
JX9710731Dinucleotide(GT)1326445..470490  bpPrimer
JX9710721Composite(TGGA)10(TAGA)76888..155242  bpPrimer
 
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