Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Trichiurus lepturus [54]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
GU0627791Dinucleotide(TG)132630..5586  bpPrimer
GU0627781Dinucleotide(AC)295827..84107  bpPrimer
GU0627831Dinucleotide(TG)173430..6394  bpPrimer
EF1576021c*(TG)45(TGCG)9*12431..154216  bpPrimer
GU0627771Dinucleotide(GT)91831..4878  bpPrimer
EF1576111Dinucleotide(CA)173451..84143  bpPrimer
EF1576071Dinucleotide(GT)285642..97124  bpPrimer
GU0627811Dinucleotide(TG)163220..5180  bpPrimer
EF1576051Dinucleotide(CA)61241..52164  bpPrimer
EF1576011Dinucleotide(GT)316214..75161  bpPrimer
GU0627801Dinucleotide(TG)102030..4971  bpPrimer
GU0627761Dinucleotide(TG)112230..5182  bpPrimer
GU0627851Dinucleotide(TG)142828..5580  bpPrimer
EF1576091Dinucleotide(CA)163239..70189  bpPrimer
EF1576092Dinucleotide(AC)234672..117189  bpPrimer
GU0627861Dinucleotide(TG)91822..39115  bpPrimer
GU0627862Dinucleotide(TG)91872..89115  bpPrimer
EF1576031Dinucleotide(GT)234645..90149  bpPrimer
EF1576032Dinucleotide(TG)193892..129149  bpPrimer
GU0627751Dinucleotide(TG)112230..5180  bpPrimer
EF1576121Dinucleotide(CA)61220..31149  bpPrimer
EF1576122Dinucleotide(CA)132654..79149  bpPrimer
GU0627821Dinucleotide(TG)122430..5379  bpPrimer
GU0627731Dinucleotide(TG)112231..5283  bpPrimer
EF1576101Tetranucleotide(TGTA)93613..48199  bpPrimer
EF1576102Dinucleotide(TG)448855..142199  bpPrimer
EF1576061Dinucleotide(TG)112243..64113  bpPrimer
GU0627841Dinucleotide(TG)102026..4576  bpPrimer
EF1576041Dinucleotide(GT)153043..72201  bpPrimer
EF1576042Dinucleotide(TG)71490..103201  bpPrimer
EF1576043Dinucleotide(TG)1836106..141201  bpPrimer
EF1576044Dinucleotide(TG)714144..157201  bpPrimer
EF1576081Dinucleotide(GT)61211..22341  bpPrimer
EF1576082Dinucleotide(TG)112234..55341  bpPrimer
EF1576083Dinucleotide(TG)81658..73341  bpPrimer
EF1576084Dinucleotide(GT)1326295..320341  bpPrimer
GU0627741Dinucleotide(AC)112218..3971  bpPrimer
GU0627721Dinucleotide(GT)326430..93111  bpPrimer
EF1576051Dinucleotide(CA)61241..52164  bpPrimer
EF1576011Dinucleotide(GT)316214..75161  bpPrimer
GU0627861Dinucleotide(TG)91822..39115  bpPrimer
GU0627862Dinucleotide(TG)91872..89115  bpPrimer
EF1576021c*(TG)45(TGCG)9*12431..154216  bpPrimer
EF1576121Dinucleotide(CA)61220..31149  bpPrimer
EF1576122Dinucleotide(CA)132654..79149  bpPrimer
EF1576091Dinucleotide(CA)163239..70189  bpPrimer
EF1576092Dinucleotide(AC)234672..117189  bpPrimer
GU0627811Dinucleotide(TG)163220..5180  bpPrimer
GU0627851Dinucleotide(TG)142828..5580  bpPrimer
GU0627801Dinucleotide(TG)102030..4971  bpPrimer
GU0627731Dinucleotide(TG)112231..5283  bpPrimer
EF1576081Dinucleotide(GT)61211..22341  bpPrimer
EF1576082Dinucleotide(TG)112234..55341  bpPrimer
EF1576083Dinucleotide(TG)81658..73341  bpPrimer
EF1576084Dinucleotide(GT)1326295..320341  bpPrimer
GU0627741Dinucleotide(AC)112218..3971  bpPrimer
EF1576101Tetranucleotide(TGTA)93613..48199  bpPrimer
EF1576102Dinucleotide(TG)448855..142199  bpPrimer
GU0627771Dinucleotide(GT)91831..4878  bpPrimer
GU0627761Dinucleotide(TG)112230..5182  bpPrimer
GU0627781Dinucleotide(AC)295827..84107  bpPrimer
GU0627821Dinucleotide(TG)122430..5379  bpPrimer
EF1576111Dinucleotide(CA)173451..84143  bpPrimer
EF1576041Dinucleotide(GT)153043..72201  bpPrimer
EF1576042Dinucleotide(TG)71490..103201  bpPrimer
EF1576043Dinucleotide(TG)1836106..141201  bpPrimer
EF1576044Dinucleotide(TG)714144..157201  bpPrimer
EF1576031Dinucleotide(GT)234645..90149  bpPrimer
EF1576032Dinucleotide(TG)193892..129149  bpPrimer
GU0627841Dinucleotide(TG)102026..4576  bpPrimer
GU0627791Dinucleotide(TG)132630..5586  bpPrimer
EF1576071Dinucleotide(GT)285642..97124  bpPrimer
GU0627751Dinucleotide(TG)112230..5180  bpPrimer
GU0627831Dinucleotide(TG)173430..6394  bpPrimer
GU0627721Dinucleotide(GT)326430..93111  bpPrimer
EF1576061Dinucleotide(TG)112243..64113  bpPrimer
 
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