Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Trachinotus blochii [48]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
EU7074431Composite(TC)10(AC)93855..92214  bpPrimer
EU7074511Dinucleotide(TG)1428149..176310  bpPrimer
EU7074441Dinucleotide(TC)61249..60228  bpPrimer
EU7074442Dinucleotide(CT)112262..83228  bpPrimer
EU7074443Dinucleotide(GT)714201..214228  bpPrimer
EU7074421Dinucleotide(AC)81644..59200  bpPrimer
EU7074461Dinucleotide(GA)132628..53194  bpPrimer
EU7074471Dinucleotide(AG)1428118..145245  bpPrimer
EU7074501Dinucleotide(TG)2244144..187277  bpPrimer
EU7074521Dinucleotide(CA)714118..131294  bpPrimer
EU7074491Dinucleotide(AC)1428114..141285  bpPrimer
EU7074451Composite(TG)11(AG)114456..99196  bpPrimer
EU7074531Dinucleotide(AG)1122103..124285  bpPrimer
EU7074481Dinucleotide(AC)1428130..157229  bpPrimer
MW0867651Trinucleotide(CAG)721121..141271  bpPrimer
MW0867591Dinucleotide(CA)1836128..163311  bpPrimer
MW0867471Trinucleotide(TGT)721157..177361  bpPrimer
MW0867661Trinucleotide(TTG)824124..147281  bpPrimer
MW0867431Dinucleotide(AC)163260..91249  bpPrimer
MW0867631Trinucleotide(ATG)721122..142311  bpPrimer
MW0867621Trinucleotide(GAT)51581..95310  bpPrimer
MW0867371Dinucleotide(TC)1836157..192371  bpPrimer
MW0867451Trinucleotide(GTT)1030135..164371  bpPrimer
MW0867541Trinucleotide(GAA)515115..129281  bpPrimer
MW0867542Mononucleotide(A)2121134..154281  bpPrimer
MW0867571Trinucleotide(GGA)618131..148360  bpPrimer
MW0867561Dinucleotide(CA)1632139..170341  bpPrimer
MW0867562Mononucleotide(A)1010183..192341  bpPrimer
MW0867481Dinucleotide(AC)255074..123350  bpPrimer
MW0867482Trinucleotide(CCT)618264..281350  bpPrimer
MW0867461Dinucleotide(AC)1632146..177371  bpPrimer
MW0867601Dinucleotide(CA)1836127..162371  bpPrimer
MW0867521c*(A)10(AAG)5*23126..148311  bpPrimer
MW0867701Trinucleotide(CTC)721149..169321  bpPrimer
MW0867351Dinucleotide(TA)2040122..161311  bpPrimer
MW0867671Trinucleotide(GAT)1133153..185341  bpPrimer
MW0867511Tetranucleotide(AAAT)520176..195291  bpPrimer
MW0867391Dinucleotide(CA)1632157..188291  bpPrimer
MW0867531Trinucleotide(TAA)1339194..232366  bpPrimer
MW0867581Dinucleotide(TG)1836135..170351  bpPrimer
MW0867551Dinucleotide(TG)2244124..167361  bpPrimer
MW0867401Dinucleotide(TG)306065..124280  bpPrimer
MW0867641Pentanucleotide(TAATA)735147..181331  bpPrimer
MW0867411Dinucleotide(CA)1836131..166291  bpPrimer
MW0867421Trinucleotide(GAT)927156..182351  bpPrimer
MW0867501Tetranucleotide(TTTC)1040159..198371  bpPrimer
MW0867381Dinucleotide(GT)265285..136295  bpPrimer
MW0867491Dinucleotide(AC)1530163..192341  bpPrimer
MW0867361Dinucleotide(GT)2244125..168381  bpPrimer
MW0867441Dinucleotide(AC)1836163..198341  bpPrimer
MW0867611Trinucleotide(ACC)515130..144381  bpPrimer
MW0867612Mononucleotide(A)1818215..232381  bpPrimer
MW0867681Dinucleotide(TG)2244122..165321  bpPrimer
MW0867691Mononucleotide(C)1515121..135421  bpPrimer
MW0867692Trinucleotide(GCC)515149..163421  bpPrimer
 
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