Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Thunnus orientalis [111]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AB4271281Dinucleotide(AG)6121..12239  bpPrimer
AB4271282Dinucleotide(CA)1224115..138239  bpPrimer
AB4628931Dinucleotide(TG)1938132..169195  bpPrimer
AB4271271Dinucleotide(GT)816182..197248  bpPrimer
AB3316981Dinucleotide(TG)71414..27480  bpPrimer
AB3316982Dinucleotide(TG)1938359..396480  bpPrimer
AB4628981Trinucleotide(GTT)5151..15231  bpPrimer
AB4628982Trinucleotide(TGC)721169..189231  bpPrimer
AB4628983Dinucleotide(TC)714218..231231  bpPrimer
AB4271151Composite(CT)12(CA)73898..135247  bpPrimer
AB3316991Dinucleotide(TG)71440..53451  bpPrimer
AB3316992Dinucleotide(GA)102066..85451  bpPrimer
AB3316871Dinucleotide(GT)1938333..370447  bpPrimer
AB4271211Dinucleotide(CA)81671..86200  bpPrimer
AB4271191Dinucleotide(CT)714143..156249  bpPrimer
AB4271192Dinucleotide(AC)816165..180249  bpPrimer
AB4271221Mononucleotide(T)101022..31157  bpPrimer
AB4271222Trinucleotide(TTG)61836..53157  bpPrimer
AB4271181Dinucleotide(AC)71473..86246  bpPrimer
AB4271182Dinucleotide(CA)816120..135246  bpPrimer
AB3317001Dinucleotide(CA)2346166..211487  bpPrimer
AB3317002Dinucleotide(GT)612248..259487  bpPrimer
AB3317003Dinucleotide(CA)1530340..369487  bpPrimer
AB3317004Dinucleotide(AC)1020371..390487  bpPrimer
AB3316881Dinucleotide(TG)816367..382496  bpPrimer
AB3316882Dinucleotide(CT)612465..476496  bpPrimer
AB4271201Trinucleotide(ATT)82468..91214  bpPrimer
AB4629021Trinucleotide(TGC)61896..113224  bpPrimer
AB3316941Dinucleotide(GT)2652564..615654  bpPrimer
AB4271331Mononucleotide(A)111138..48151  bpPrimer
AB4271332Dinucleotide(TA)91855..72151  bpPrimer
AB4271231Dinucleotide(GT)112265..86200  bpPrimer
AB3316971Dinucleotide(TG)612144..155411  bpPrimer
AB3316972Dinucleotide(TG)816276..291411  bpPrimer
AB3316973Tetranucleotide(CTAT)1248313..360411  bpPrimer
AB4271291Dinucleotide(TG)918121..138203  bpPrimer
AB4271091Dinucleotide(GT)102036..55202  bpPrimer
AB3316841Dinucleotide(TG)91853..70604  bpPrimer
AB3316842Mononucleotide(G)1010324..333604  bpPrimer
AB3316843Dinucleotide(AG)1326507..532604  bpPrimer
AB3316861Dinucleotide(TG)1428525..552622  bpPrimer
AB3316862Dinucleotide(TG)816557..572622  bpPrimer
AB3317051Dinucleotide(TG)173497..130521  bpPrimer
AB3317052Mononucleotide(T)1010446..455521  bpPrimer
AB3317053Dinucleotide(TG)918493..510521  bpPrimer
AB3316961Dinucleotide(CA)102043..62276  bpPrimer
AB3316962Dinucleotide(CA)61265..76276  bpPrimer
AB3317041Dinucleotide(GT)1428388..415632  bpPrimer
AB3317042Dinucleotide(TG)1734559..592632  bpPrimer
AB4628961Dinucleotide(TG)112295..116249  bpPrimer
AB4271301Dinucleotide(CA)1734122..155193  bpPrimer
AB4271131Dinucleotide(TG)1122138..159233  bpPrimer
AB3317021Dinucleotide(CA)2142215..256545  bpPrimer
AB3317022Dinucleotide(CA)1734342..375545  bpPrimer
AB3317023Dinucleotide(AC)714377..390545  bpPrimer
AB3316831Dinucleotide(CA)1734503..536642  bpPrimer
AB4271141Dinucleotide(AT)91852..69223  bpPrimer
AB4271161Trinucleotide(CAG)92785..111238  bpPrimer
AB4271111Dinucleotide(CA)612120..131220  bpPrimer
AB4271311Dinucleotide(AC)112228..49225  bpPrimer
AB4271321Dinucleotide(TG)122489..112172  bpPrimer
AB4628971Dinucleotide(TG)1530101..130238  bpPrimer
AB4271121Dinucleotide(TG)71453..66209  bpPrimer
AB4271261Trinucleotide(ATC)82483..106246  bpPrimer
AB4629011Trinucleotide(GCT)61873..90230  bpPrimer
AB3317011Dinucleotide(GT)714115..128373  bpPrimer
AB3317012Dinucleotide(GT)1428131..158373  bpPrimer
AB3317013Trinucleotide(TCC)515327..341373  bpPrimer
AB3316851Dinucleotide(TG)153046..75710  bpPrimer
AB4271251Dinucleotide(CA)153051..80164  bpPrimer
AB4628941Dinucleotide(GT)142895..122234  bpPrimer
AB3316911Dinucleotide(AC)1632229..260520  bpPrimer
AB3316901Dinucleotide(TG)1326102..127217  bpPrimer
AB3317031Dinucleotide(GT)1836144..179505  bpPrimer
AB3316921Dinucleotide(CA)1836468..503560  bpPrimer
AB4271171Dinucleotide(GT)1122127..148228  bpPrimer
AB4271101Dinucleotide(AC)2652114..165214  bpPrimer
AB4628951Dinucleotide(TG)1224167..190224  bpPrimer
AB4628991Trinucleotide(GCT)92770..96237  bpPrimer
AB3316891Dinucleotide(TG)816521..536659  bpPrimer
AB3316951Dinucleotide(GT)1428198..225626  bpPrimer
AB4629001Trinucleotide(TGC)824179..202239  bpPrimer
AB3316931Dinucleotide(AC)1020341..360817  bpPrimer
AB3316932Dinucleotide(AC)714428..441817  bpPrimer
AB4271241Dinucleotide(TG)91834..51186  bpPrimer
AB7874831Composite(TG)15(AG)1458387..444497  bpPrimer
AB7874531Dinucleotide(AC)1122379..400476  bpPrimer
AB7874881Dinucleotide(AC)112276..97511  bpPrimer
AB7874811Dinucleotide(CA)1020189..208308  bpPrimer
AB7874812Dinucleotide(CA)1224211..234308  bpPrimer
AB7874641Dinucleotide(CA)61239..50437  bpPrimer
AB7874642Dinucleotide(CA)163253..84437  bpPrimer
AB7874621Dinucleotide(CA)918348..365630  bpPrimer
AB7874622Dinucleotide(AC)918445..462630  bpPrimer
AB7874623Dinucleotide(CA)2040464..503630  bpPrimer
AB7874971Dinucleotide(CT)1224231..254360  bpPrimer
AB7874751Tetranucleotide(CAGG)72878..105481  bpPrimer
AB7874631Dinucleotide(AC)612229..240521  bpPrimer
AB7874632Dinucleotide(AC)1428371..398521  bpPrimer
AB7874891Dinucleotide(TG)1020354..373479  bpPrimer
AB7874871Dinucleotide(GT)612144..155405  bpPrimer
AB7874561Dinucleotide(CA)1530395..424568  bpPrimer
AB7874991Dinucleotide(GT)122479..102541  bpPrimer
AB7874711Dinucleotide(AC)1938116..153660  bpPrimer
AB7874712Dinucleotide(TC)714388..401660  bpPrimer
AB7874861Dinucleotide(AC)1020201..220474  bpPrimer
AB7874501Dinucleotide(AC)714223..236503  bpPrimer
AB7874502Dinucleotide(CA)1326364..389503  bpPrimer
AB7874701Dinucleotide(TG)61292..103544  bpPrimer
AB7874702Dinucleotide(TG)918371..388544  bpPrimer
AB7874671Dinucleotide(GT)163288..119452  bpPrimer
AB7874661Dinucleotide(CA)153081..110270  bpPrimer
AB7874731Dinucleotide(TC)1020146..165470  bpPrimer
AB7874791Dinucleotide(GT)918306..323420  bpPrimer
AB7874781Dinucleotide(AC)91862..79490  bpPrimer
AB7874782Dinucleotide(CA)816197..212490  bpPrimer
AB7874783Dinucleotide(CA)612215..226490  bpPrimer
AB7874851Dinucleotide(AC)204024..63278  bpPrimer
AB7874521Mononucleotide(T)1010130..139505  bpPrimer
AB7874522Dinucleotide(TG)612324..335505  bpPrimer
AB7874601Trinucleotide(AAC)51558..72473  bpPrimer
AB7874941Dinucleotide(TG)61236..47469  bpPrimer
AB7874571Dinucleotide(CA)918105..122409  bpPrimer
AB7874951Dinucleotide(CA)1938120..157570  bpPrimer
AB7874771Dinucleotide(TG)816639..6541180  bpPrimer
AB7874551Dinucleotide(AC)91878..95670  bpPrimer
AB7874552Dinucleotide(CA)1020166..185670  bpPrimer
AB7874553Dinucleotide(AC)1224578..601670  bpPrimer
AB7874761Dinucleotide(CA)122480..103476  bpPrimer
AB7874721Dinucleotide(CA)122483..106548  bpPrimer
AB7874722Dinucleotide(AC)612110..121548  bpPrimer
AB7874981Dinucleotide(AG)714439..452540  bpPrimer
AB7874982Dinucleotide(GT)816467..482540  bpPrimer
AB7874983Dinucleotide(GT)918499..516540  bpPrimer
AB7875001Pentanucleotide(CTCTC)525256..280361  bpPrimer
AB7875002Dinucleotide(GT)612286..297361  bpPrimer
AB7874931Dinucleotide(GT)1428162..189580  bpPrimer
AB7874932Dinucleotide(TG)918509..526580  bpPrimer
AB7874691Dinucleotide(CA)122494..117432  bpPrimer
AB7874692Dinucleotide(AC)714119..132432  bpPrimer
AB7874693Dinucleotide(AC)1428268..295432  bpPrimer
AB7874481Dinucleotide(AC)2040558..597817  bpPrimer
AB7874921Dinucleotide(CT)1020544..563625  bpPrimer
AB7874841Dinucleotide(AC)612366..377712  bpPrimer
AB7874842Dinucleotide(CA)1734509..542712  bpPrimer
AB7874961Dinucleotide(CA)71483..96675  bpPrimer
AB7874962Dinucleotide(AC)91898..115675  bpPrimer
AB7874963Trinucleotide(TCA)721621..641675  bpPrimer
AB7874911Dinucleotide(AG)1836228..263727  bpPrimer
AB7874651Dinucleotide(AC)2040352..391608  bpPrimer
AB7874581Dinucleotide(CA)1122331..352496  bpPrimer
AB7874582Dinucleotide(TC)714415..428496  bpPrimer
AB7874591Dinucleotide(GT)918529..546578  bpPrimer
AB7874681Mononucleotide(T)111165..75584  bpPrimer
AB7874682Dinucleotide(GT)612349..360584  bpPrimer
AB7874901Dinucleotide(TC)1020388..407464  bpPrimer
AB7874511Dinucleotide(CA)1020483..502614  bpPrimer
AB7874801Dinucleotide(GT)1428359..386528  bpPrimer
AB7874611Dinucleotide(CA)1122494..515731  bpPrimer
AB7874541Dinucleotide(TG)1326306..331436  bpPrimer
AB7874542Dinucleotide(TG)1326346..371436  bpPrimer
AB7874741Dinucleotide(TG)918247..264594  bpPrimer
AB7874742Dinucleotide(TC)612289..300594  bpPrimer
AB7874743Dinucleotide(TG)612407..418594  bpPrimer
AB7874491Dinucleotide(TG)193871..108416  bpPrimer
AB7874821Dinucleotide(TG)173486..119625  bpPrimer
 
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