Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Thunnus obesus [17]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AB5574991Dinucleotide(CA)1020164..183267  bpPrimer
AB5575061Dinucleotide(GT)122456..79261  bpPrimer
AB5574981Dinucleotide(CA)71450..63216  bpPrimer
AB5574971Dinucleotide(AC)142876..103190  bpPrimer
AB5575081Dinucleotide(TG)918138..155241  bpPrimer
AB5575071Dinucleotide(TG)132672..97202  bpPrimer
AB5574931Dinucleotide(CA)122477..100202  bpPrimer
AB5574932Dinucleotide(CA)612103..114202  bpPrimer
AB5574933Dinucleotide(AC)612116..127202  bpPrimer
AB5574934Dinucleotide(TG)612152..163202  bpPrimer
AB5575031Dinucleotide(TG)81686..101244  bpPrimer
AB5575032Dinucleotide(TG)714104..117244  bpPrimer
AB5575041Dinucleotide(AC)81691..106278  bpPrimer
AB5575001Dinucleotide(AC)714151..164230  bpPrimer
AB5575002Dinucleotide(AC)816167..182230  bpPrimer
AB5574961Dinucleotide(AC)132651..76288  bpPrimer
AB5575091Dinucleotide(CA)61276..87263  bpPrimer
AB5575092Dinucleotide(AC)61289..100263  bpPrimer
AB5574941Dinucleotide(TG)122461..84159  bpPrimer
AB5574951Dinucleotide(AC)1020116..135427  bpPrimer
AB5574952Dinucleotide(AC)1632138..169427  bpPrimer
AB5575021Dinucleotide(TG)1122123..144220  bpPrimer
AB5575011Dinucleotide(TG)1224163..186284  bpPrimer
 
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