Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Thunnus albacares [38]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
EF4676341Tetranucleotide(ATAG)114424..67317  bpPrimer
EF4676342Tetranucleotide(GATA)52071..90317  bpPrimer
EF4676291Tetranucleotide(GATA)1872183..254624  bpPrimer
EF4676301Tetranucleotide(TCTA)83240..71224  bpPrimer
EF4676281Tetranucleotide(TATC)624292..315370  bpPrimer
EF4676282Tetranucleotide(CATC)520320..339370  bpPrimer
EF4676371Tetranucleotide(AGAT)1456234..289444  bpPrimer
EF4676311Trinucleotide(CCT)92792..118150  bpPrimer
EF4676351Tetranucleotide(TATC)1664207..270440  bpPrimer
EF4676381Tetranucleotide(ATCT)1144209..252277  bpPrimer
EF4676391Tetranucleotide(TAGA)135217..68261  bpPrimer
EF4676321Tetranucleotide(CTAT)2392233..324422  bpPrimer
EF4676322Tetranucleotide(CCAT)832333..364422  bpPrimer
EF4676331Tetranucleotide(TATC)187296..167191  bpPrimer
MT9206931Dinucleotide(GT)816137..152341  bpPrimer
MT9206781Dinucleotide(TG)1428164..191248  bpPrimer
MT9206871Dinucleotide(CA)1122117..138271  bpPrimer
MT9206951Trinucleotide(ATA)721154..174291  bpPrimer
MT9207001Trinucleotide(CTC)1133129..161311  bpPrimer
MT9206911Dinucleotide(AG)1428152..179331  bpPrimer
MT9207011Trinucleotide(ATT)515141..155351  bpPrimer
MT9206861Dinucleotide(AC)91861..78191  bpPrimer
MT9206841Dinucleotide(AC)71494..107231  bpPrimer
MT9206921Dinucleotide(CA)1122175..196310  bpPrimer
MT9206981Trinucleotide(TCC)1030132..161341  bpPrimer
MT9206801Trinucleotide(TTA)72187..107210  bpPrimer
MT9206941Dinucleotide(TG)1326171..196291  bpPrimer
MT9206811Dinucleotide(GT)112281..102280  bpPrimer
MT9206991Tetranucleotide(TTAT)520116..135281  bpPrimer
MT9206901Dinucleotide(CA)1020102..121451  bpPrimer
MT9206831Dinucleotide(AC)1122111..132204  bpPrimer
MT9206832Mononucleotide(T)1111194..204204  bpPrimer
MT9206891Dinucleotide(TG)816206..221391  bpPrimer
MT9206881Dinucleotide(GT)61235..46431  bpPrimer
MT9206882Mononucleotide(T)161649..64431  bpPrimer
MT9206883Mononucleotide(A)1010101..110431  bpPrimer
MT9206884Dinucleotide(TG)1122272..293431  bpPrimer
MT9207031Dinucleotide(TA)612143..154351  bpPrimer
MT9206851Dinucleotide(TA)61297..108212  bpPrimer
MT9207021Dinucleotide(TG)1122132..153301  bpPrimer
MT9206971Mononucleotide(A)111120..30262  bpPrimer
MT9206972Mononucleotide(A)111157..67262  bpPrimer
MT9206973Dinucleotide(TG)1020176..195262  bpPrimer
MT9206791Dinucleotide(TG)1938151..188301  bpPrimer
MT9206821Dinucleotide(CA)612119..130241  bpPrimer
MT9206961Dinucleotide(AC)1530139..168291  bpPrimer
 
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